SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28890

Length: 234 nt

UniGene Fasta

>sp_v1.1_unigene28890
CAGATTCGTAGGAAAATGAGAGAGATCATGGTACGTGAAGCTACTTCATGTGATCTGAAAGAGCTAGTGGCAAAATTTATTCCCGAGGTGATTGGAAAGGAGATTATTTATCCTCTGCAAAATGTATTCATCAGAAAAGTTAAAATTTTGAAGGCTCCAAAATTTGACCTTGGAAAGCTTATGGAGGTACATGGAGATTATTCCGAGGATGTTGGAGTCAAGGTTGATAGGCCA

Ace file of the UniGene sp_v1.1_unigene28890

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S3A (RPS3aA); K02984 small subunit ribosomal protein S3Ae	-	-	2.0e-31	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	1.27521e-32	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.27521e-32	88%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	1.27521e-32	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.27521e-32	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S3Ae	IPR001593	-	1.27521e-32	88%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNV8

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 78 - 245

Fln protein: QIRRKMREIMVREATSCDLKELVAKFIPEVIGKEIIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRP

Protein Length: 79

Fln nts: CAGATTCGTAGGAAAATGAGAGAGATCATGGTACGTGAAGCTACTTCATGTGATCTGAAAGAGCTAGTGGCAAAATTTATTCCCGAGGTGATTGGAAAGGAGATTATTTATCCTCTGCAAAATGTATTCATCAGAAAAGTTAAAATTTTGAAGGCTCCAAAATTTGACCTTGGAAAGCTTATGGAGGTACATGGAGATTATTCCGAGGATGTTGGAGTCAAGGTTGATAGGCCA

Fln Alignment:

sp_v1.1_unigene28890___QIRRKMREIMVREATSCDLKELVAKFIPEVIGKEI------IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDR
A9NNV8_______________QIRRKMTEIMIREASSCDLKELVAKFIPEVIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain