SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28884

Length: 2493 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene28884
ATGGGGACCAAATTTATTCACCGAACCGTCTTGGCACATGCTGGAACATTCCTCTACCCATAATTCCAAGTGGAGAAATCTCGACCACCAGCTTCGTCCGCGGACGGCCTAAGCTAAGTTTTTGGCATCAAAATTTACATACAAGAAGGTCAATAGGCGGTGCAGAAGATTTGTTATACTATTCGTCAATATTTACCACTTGAGTTCACAATTTGGGTCCGCCGGTTTTTGAAGGGCGGACACCAGTAAAGCATATTCCAGGATCCACGGTATCGATACAACGCCGAAGGATTTTGTTTAAACAGCTCCCTATATAAATCAACATACAAATATAAACAAACTACGAAAGCATTGAATACTTCTCGCTTGCTTCCTCTGCGTAATTTCACTGCATTGCTCGAGCTTCAAACATTCAGAAAATGAGTAGCACCAATTTCTCATTCAAGTTGGCTGATCATCCTAAGCTTCCAAAGGGGAAGCAGTTGGCTGTGGTAGTTTTGGACGGTTGGGGCGAGGAAAAACCGGATCAGTACAACTGTATTCATGTTGCCGAGACTCCCGCCATGGATTCTCTTAAGAAGGGGGCTCCAGAGAAATGGACACTGATCAAAGCACATGGACCTGCAGTTGGACTCCCTACTGAAGATGATATGGGTAACAGTGAAGTAGGTCACAATGCTCTCGGAGCTGGGAGAATATTTGCTCAAGGAGCAAAATTAGTGGATTACGCTCTTGCCTCTGGCAAAATCTATCAGGGAGAAGGGTTTACATACATTAAGGAGTGCTTTGAAAATGGCACACTTCATCTCATTGGCCTTTTGAGTGATGGTGGTGTCCACTCACGTTTAGATCAGTTGCAGTTGCTTTTGAAAGGTGTTCCACAATATGGTGCAAAAAGGATCCGAGTGCATATTCTCACTGATGGTCGTGATTGTCTGGATGGGTCAAGTATTGGCTATGTAGAGACACTAGAGAATGATCTTGCTGAGTTACGGAAACAAGGTGTTGATGCTTTAATTGCCTCTGGTGGAGGTCGCATGTATGTGACAATGGATCGCTATGAGAATGATTGGGGTGTGGTCAAACGAGGCTGGGATGCCCAGGTTTTGGGAAAAGCACCTTATAAATTTAGAAATGCTGTGGAAGCAGTCAAGAAGCTTCGGGAAGCTCCAAAAGCTAGTGATCAATATTTACCTCCATTTGTCATTGTCGATGAAAATGACAAGGCCGTTGGACCTATTCTTGATGGAGATGCAGTGGTGACCATTAATTTCCGAGCAGATCGTATGACTATGGTTGCTAAAGCATTCGAATATGAGAATTTTAGTGCATTTGATCGAGTTCGGTATCCTAAAATTCGATATGCAGGAATGCTTCAGTATGATGGAGAGTTAAAGCTTCCGGCTCATTATCTTGTTTCCCCACCAGATATCGATAGAACATCAGGAGAATATCTTGTACACAATGGGATACGGACATTTGCATGCAGTGAAACTGTAAAATTCGGTCACGTTACATTTTTCTGGAACGGCAACCGGTCCGGATATTTTAACGAGGAACTGGAGGAATATGTGGAAATCCCAAGTGATTCAGGAATCACATTCAATGTCCAACCAAAAATGAAGGCCTTGGAAATTGCTGAAAGAACCAGAGATGCCATATTGAGTGGCCGTTATGATCAGGTTCGTGTGAATCTGCCAAATGGTGATATGGTAGGGCACACTGGCGATATAGAGGCAACGGTTGTTGCGTGTAAGGCTGCTGATGAGGCTGTAAAGATTATTCTTGATGCAATAGAACAAGTTGGCGGCATCTACCTTGTTACGGCAGATCATGGAAATGCCGAGGATATGGTGAAAAGAAACAAAACAGGTCAACCGGCGAAGGATAAAGATGGAAAAATTCAAATTCTGACTTCTCATACTTGTTCCCCAGTGCCAATTGCTATAGGAGGTCCTGGACTTACGAAAGGAGTGAGGTTTCGTACTGATTTGAAACAGCCCGGGCTTGCAAATGTTGCCTCCACCATAATTAATCTCTTGGGATTCGAGGCTCCAAGTGATTATGAGCCAACTTTGATTGAAGTTGCCAGCAATTGATCTATGAGTCAAATATGGCAATTTTTGGAAGCCAAGTTTAGTAGGTCATTTCTTAAATTTGTCATAATTGTTCTGTTGTTTCAGAATGCACCCTGAGAATAGAATCTAGATACAGTAATTGGTTAGTTCTGCGGCTTTTTGCGAATAAATTTATGTTGTGAGTAGCATACTTATTCAAATGATACTAATTTATCAAGATGCTTGTGATATTTCCTTTTTAAGAGGAAATTTAATAATGCTAAAGGCAAAAATTCATGTATCTATTATACGTTCGTGTATTTGTTTCTGGAGTGTTCAAAAGCTAGTGGGAAACTATATTCTCCATCCATGTTAGTTATGCACATACCATATATTTAATTTCTCAGAAACAATAAAAAGGCAACTAGAAAAAAGA

Ace file of the UniGene sp_v1.1_unigene28884 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Mesembryanthemum crystallinum RepID=PMGI_MESCR	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	bisphosphoglycerate-independent phosphoglycerate mutase	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	isomerase activity	GO:0016853	Molecular Function	90%
Blast2go	cytosol	GO:0005829	Cellular Component	90%
Blast2go	mitochondrial envelope	GO:0005740	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	IPR005995	-	90%
Blast2go	Metalloenzyme	IPR006124	-	90%
Blast2go	BPG-independent PGAM, N-terminal	IPR011258	-	90%
Blast2go	Alkaline phosphatase-like, alpha/beta/alpha	IPR017849	-	90%
Blast2go	Alkaline-phosphatase-like, core domain	IPR017850	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH9

Fln msg: your sequence is longer than subject: 560 - 410

Fln protein: MSSTNFSFKLADHPKLPKGKQLAVVVLDGWGEEKPDQYNCIHVAETPAMDSLKKGAPEKWTLIKAHGPAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDYALASGKIYQGEGFTYIKECFENGTLHLIGLLSDGGVHSRLDQLQLLLKGVPQYGAKRIRVHILTDGRDCLDGSSIGYVETLENDLAELRKQGVDALIASGGGRMYVTMDRYENDWGVVKRGWDAQVLGKAPYKFRNAVEAVKKLREAPKASDQYLPPFVIVDENDKAVGPILDGDAVVTINFRADRMTMVAKAFEYENFSAFDRVRYPKIRYAGMLQYDGELKLPAHYLVSPPDIDRTSGEYLVHNGIRTFACSETVKFGHVTFFWNGNRSGYFNEELEEYVEIPSDSGITFNVQPKMKALEIAERTRDAILSGRYDQVRVNLPNGDMVGHTGDIEATVVACKAADEAVKIILDAIEQVGGIYLVTADHGNAEDMVKRNKTGQPAKDKDGKIQILTSHTCSPVPIAIGGPGLTKGVRFRTDLKQPGLANVASTIINLLGFEAPSDYEPTLIEVASN*

Protein Length: 561

Fln nts: ATGGGGACCAAATTTATTCACCGAACCGTCTTGGCACATGCTGGAACATTCCTCTACCCATAATTCCAAGTGGAGAAATCTCGACCACCAGCTTCGTCCGCGGACGGCCTAAGCTAAGTTTTTGGCATCAAAATTTACATACAAGAAGGTCAATAGGCGGTGCAGAAGATTTGTTATACTATTCGTCAATATTTACCACTTGAGTTCACAATTTGGGTCCGCCGGTTTTTGAAGGGCGGACACCAGTAAAGCATATTCCAGGATCCACGGTATCGATACAACGCCGAAGGATTTTGTTTAAACAGCTCCCTATATAAATCAACATACAAATATAAACAAACTACGAAAGCATTGAATACTTCTCGCTTGCTTCCTCTGCGTAATTTCACTGCATTGCTCGAGCTTCAAACATTCAGAAA_-_ATGAGTAGCACCAATTTCTCATTCAAGTTGGCTGATCATCCTAAGCTTCCAAAGGGGAAGCAGTTGGCTGTGGTAGTTTTGGACGGTTGGGGCGAGGAAAAACCGGATCAGTACAACTGTATTCATGTTGCCGAGACTCCCGCCATGGATTCTCTTAAGAAGGGGGCTCCAGAGAAATGGACACTGATCAAAGCACATGGACCTGCAGTTGGACTCCCTACTGAAGATGATATGGGTAACAGTGAAGTAGGTCACAATGCTCTCGGAGCTGGGAGAATATTTGCTCAAGGAGCAAAATTAGTGGATTACGCTCTTGCCTCTGGCAAAATCTATCAGGGAGAAGGGTTTACATACATTAAGGAGTGCTTTGAAAATGGCACACTTCATCTCATTGGCCTTTTGAGTGATGGTGGTGTCCACTCACGTTTAGATCAGTTGCAGTTGCTTTTGAAAGGTGTTCCACAATATGGTGCAAAAAGGATCCGAGTGCATATTCTCACTGATGGTCGTGATTGTCTGGATGGGTCAAGTATTGGCTATGTAGAGACACTAGAGAATGATCTTGCTGAGTTACGGAAACAAGGTGTTGATGCTTTAATTGCCTCTGGTGGAGGTCGCATGTATGTGACAATGGATCGCTATGAGAATGATTGGGGTGTGGTCAAACGAGGCTGGGATGCCCAGGTTTTGGGAAAAGCACCTTATAAATTTAGAAATGCTGTGGAAGCAGTCAAGAAGCTTCGGGAAGCTCCAAAAGCTAGTGATCAATATTTACCTCCATTTGTCATTGTCGATGAAAATGACAAGGCCGTTGGACCTATTCTTGATGGAGATGCAGTGGTGACCATTAATTTCCGAGCAGATCGTATGACTATGGTTGCTAAAGCATTCGAATATGAGAATTTTAGTGCATTTGATCGAGTTCGGTATCCTAAAATTCGATATGCAGGAATGCTTCAGTATGATGGAGAGTTAAAGCTTCCGGCTCATTATCTTGTTTCCCCACCAGATATCGATAGAACATCAGGAGAATATCTTGTACACAATGGGATACGGACATTTGCATGCAGTGAAACTGTAAAATTCGGTCACGTTACATTTTTCTGGAACGGCAACCGGTCCGGATATTTTAACGAGGAACTGGAGGAATATGTGGAAATCCCAAGTGATTCAGGAATCACATTCAATGTCCAACCAAAAATGAAGGCCTTGGAAATTGCTGAAAGAACCAGAGATGCCATATTGAGTGGCCGTTATGATCAGGTTCGTGTGAATCTGCCAAATGGTGATATGGTAGGGCACACTGGCGATATAGAGGCAACGGTTGTTGCGTGTAAGGCTGCTGATGAGGCTGTAAAGATTATTCTTGATGCAATAGAACAAGTTGGCGGCATCTACCTTGTTACGGCAGATCATGGAAATGCCGAGGATATGGTGAAAAGAAACAAAACAGGTCAACCGGCGAAGGATAAAGATGGAAAAATTCAAATTCTGACTTCTCATACTTGTTCCCCAGTGCCAATTGCTATAGGAGGTCCTGGACTTACGAAAGGAGTGAGGTTTCGTACTGATTTGAAACAGCCCGGGCTTGCAAATGTTGCCTCCACCATAATTAATCTCTTGGGATTCGAGGCTCCAAGTGATTATGAGCCAACTTTGATTGAAGTTGCCAGCAATTGA___TCTATGAGTCAAATATGGCAATTTTTGGAAGCCAAGTTTAGTAGGTCATTTCTTAAATTTGTCATAATTGTTCTGTTGTTTCAGAATGCACCCTGAGAATAGAATCTAGATACAGTAATTGGTTAGTTCTGCGGCTTTTTGCGAATAAATTTATGTTGTGAGTAGCATACTTATTCAAATGATACTAATTTATCAAGATGCTTGTGATATTTCCTTTTTAAGAGGAAATTTAATAATGCTAAAGGCAAAAATTCATGTATCTATTATACGTTCGTGTATTTGTTTCTGGAGTGTTCAAAAGCTAGTGGGAAACTATATTCTCCATCCATGTTAGTTATGCACATACCATATATTTAATTTCTCAGAAACAATAAAAAGGCAACTAGAAAAAAGA

Fln Alignment:

sp_v1.1_unigene28884___MSSTNFSFKLADHPKLPKGKQLAVVVLDGWGEEKPDQYNCIHVAETPAMDSLKKGAPEKWTLIKAHGPAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDYALASGKIYQGEGFTYIKECFENGTLHLIGLLSDGGVHSRLDQLQLLLKGVPQYGAKRIRVHILTDGRDCLDGSSIGYVETLENDLAELRKQGVDALIASGGGRMYVTMDRYENDWGVVKRGWDAQVLGKAPYKFRNAVEAVKKLREAPKASDQYLPPFVIVDENDKAVGPILDGDAVVTINFRADRMTMVAKAFEYENFSAFDRVRYPKIRYAGMLQYDGELKLPAHYLVSPPDIDRTSGEYLVHNGIRTFACSETVKFGHVTFFWNGNRSGYFNEELEEYVEIPSDSGITFNVQPKMKALEI
A9NUH9_______________MGSTDFSFKLADHPKIPKGKQLAVIILDGWGEEKPDQYNCIYVAETPTMDSLKKGAPEKWTLIKAHGPAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDYALASGKIYEGAGFKYIKESFENGTLHLIGLLSDGGVHSRLDQLQLLLKGAAQNGAKRIRVHILTDGRDCLDGSSIGYVETLENDLVELQKQGVDAQIASGGGRMYVTMDRYENDWGVVKRGWDAQVLGKAPHKFRSALEAVKKLREDPKASDQYLPPFVIVDENEKAVGPILDGDAVVTINFRADRMTMVAKAFEYENFSAFDRVRYPKIRYAGMLQYDGELKLPSHYLVSPPDIDRTSGEYLVHNGIRTFACSETVKFGHVTFFWNGNRSGYFNEELETYVEIPSDSGITFNVKPKNKRCHI

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
2199		72	27		1.0
2221	25		75		1.0
2297		11		88	0.923564
2315	66			33	1.0
2320	77	22			0.999999
2321	77	22			0.999999
2323	77	11		11	0.968132
2324	55	11	11	22	0.999999
2325	85	14			0.993533
2326		28	14	57	1.0
2327	14	71		14	0.984337
2328			14	85	0.993533
2329	16			83	0.994512
2331	16			83	0.994512
2335	16	83			0.994512
2336		83	16		0.994512
2338		83		16	0.994512
2342		16		83	0.994512
2347		83	16		0.994512
2357		25	75		0.996473
2358		25		75	0.996473
2359	50	50			1.0
2360	75	25			0.996473
2436		33	66		0.997452
2437		33	66		0.997452
2438		33	66		0.997452
2439		33		66	0.997452
2441			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain