SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28876

Length: 301 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene28876
TTCACGGTGATCCATCTTTGTCCGATAATGAATTTGAGGAGAAACATCATATGTTCATCAGACAGGGAAGATGTACCCTTACAAGGGCTATCGACGAGACATTGTATCAGTTCTTGCTAATGCCACCTTTAGAAGGAAGCATGTGCAAGATCAGGTTCGAGAAGGTGGGGGTTTGTTTCTGCTTTTGCAACAATGTGTAGTGGACGAGAATAGTCCTTTCTTAAGAGAATGGGGCTTATGGGCAATGAGAAATTTGTTAGAAGGGAATAGAGAGAACCAGCGGGAAGTAGCTGAGTTGGAG

Ace file of the UniGene sp_v1.1_unigene28876

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MEE50; MEE50 (maternal effect embryo arrest 50); binding	-	-	5.0e-26	69%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	66%
Blast2go	protein	-	-	1.77671e-26	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	1.77671e-26	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	1.77671e-26	76%
Blast2go	Ataxin-10 domain	IPR019156	-	1.77671e-26	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IC51

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 32 aas, your sequence is shorter than subject: 100 - 496

Fln protein: SR*SIFVR**I*GETSYVHQTGKMYPYKGYRRDIVSVLANATFRRKHVQDQVREGGGLFLLLQQCVVDENSPFLREWGLWAMRNLLEGNRENQREVAELE

Protein Length: 101

Fln nts: TTCACGGTGATCCATCTTTGTCCGATAATGAATTTGAGGAGAAACATCATATGTTCATCAGACAGGGAAGATGTACCCTTACAAGGGCTATCGACGAGACATTGTATCAGTTCTTGCTAATGCCACCTTTAGAAGGAAGCATGTGCAAGATCAGGTTCGAGAAGGTGGGGGTTTGTTTCTGCTTTTGCAACAATGTGTAGTGGACGAGAATAGTCCTTTCTTAAGAGAATGGGGCTTATGGGCAATGAGAAATTTGTTAGAAGGGAATAGAGAGAACCAGCGGGAAGTAGCTGAGTTGGAG

Fln Alignment:

sp_v1.1_unigene28876___KMYPYKGYRRDIVSVLANATFRRKHVQDQVREGGGLFLLLQQCVVDENSPFLREWGLWAMRNLLEGNRENQREVAELE
B9IC51_______________KVCPYKGFRRDLVAVIGNCAYRRKHVQDDIRQKNGMLLMLQQCVTDEDNPFLREWGIWSMRNLLEGNSENQQAVAELE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain