SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28861

Length: 1409 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28861

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI	-	-	51%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	af154423_1 beta-galactosidase	-	-	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: your sequence is shorter than subject: 397 - 861

Fln protein: WSWHKEDVGIWGKDHFSGQGLLEQLYTVLDKSDFLWYTISVNIDENEPFLKNGSQLILQVVTRGHALHVFANGNFVGTQSGNDSNNNFTYEKPVTLKAGKNQIALLSVTVGQANYGPFFDTWTAGINGPVKLLGLKNGPLDLTDQTWDYQIGVKGEHLKLYSDAGAKRVEWISGADPPKQAALTWYKTEFNAPEGNDAVALDFSTLSKGQAWVNGNHIGRYFPTLKAPADECSEVCDYRGPYEPSKCVTNCGQPTQTLYHVPRSWLQPTKNVLVLLEEVGGDPTGISLRKRQVDTVCAHVSQDHPTGNSSTSPELRLQCSSGQHISSISFASFGNPTGYCGNFIKGSHDAGSSTSLVENACVGNEACSISVSEDVFESHFDEHVIKSLAVEAVCKY*

Protein Length: 398

Fln nts: TGGTCATGGCACAAAGAAGATGTTGGAATCTGGGGAAAAGATCATTTCTCTGGCCAGGGCTTGTTAGAGCAGCTATACACTGTTCTAGATAAAAGTGACTTTCTATGGTATACAATCAGTGTTAATATCGATGAAAATGAACCCTTTCTAAAGAATGGAAGCCAATTAATCTTGCAAGTGGTAACACGAGGACATGCACTCCATGTGTTTGCCAATGGAAATTTTGTAGGAACTCAAAGTGGAAACGATTCGAATAATAATTTTACGTACGAGAAGCCGGTTACACTGAAGGCTGGCAAGAATCAGATAGCTTTGCTCAGTGTCACAGTTGGACAGGCGAATTACGGACCTTTCTTTGATACATGGACTGCGGGAATAAATGGTCCTGTGAAATTGCTGGGACTTAAAAATGGGCCATTGGATCTGACTGACCAGACCTGGGATTACCAGATTGGTGTGAAGGGGGAACACTTAAAACTATATTCAGACGCTGGAGCCAAGCGAGTTGAATGGATTTCAGGAGCAGATCCTCCCAAACAAGCTGCCCTTACCTGGTACAAGACCGAGTTTAATGCACCAGAAGGCAACGATGCAGTGGCTCTGGACTTCAGCACCCTGAGCAAAGGGCAAGCATGGGTAAATGGGAATCATATTGGGCGCTATTTTCCAACACTGAAGGCTCCCGCCGATGAATGCTCTGAAGTTTGCGATTACAGAGGGCCTTATGAACCATCCAAATGTGTCACTAACTGCGGACAACCCACACAAACATTGTACCATGTTCCTCGCTCGTGGCTGCAACCAACCAAGAACGTGTTAGTTCTGCTCGAGGAAGTCGGTGGTGATCCTACTGGAATTTCACTCCGAAAAAGACAGGTGGACACTGTCTGCGCTCATGTTTCTCAAGATCACCCAACGGGTAACTCATCGACCTCACCAGAGCTACGGCTCCAGTGCTCTTCAGGGCAACACATATCATCCATAAGCTTTGCAAGCTTTGGAAATCCAACTGGGTATTGTGGAAATTTCATCAAAGGCTCGCACGATGCAGGGAGTTCAACTTCCTTGGTAGAAAATGCATGCGTAGGTAATGAGGCATGCTCAATCTCTGTCTCAGAAGATGTATTCGAAAGCCATTTTGATGAGCATGTGATCAAGTCTTTGGCAGTTGAGGCTGTTTGCAAATATTGA___TCAAACACTCATGCTCTCCCCCAATATAGGCTGATATTGTTGATAAGTTTGTAAAAGGGTACTTTGCCTTGAATCATTGAATATGGGGATATAGGCTGATATTGTTGATAAATTTGTAAAAGGGTACTTTACCTTGTAATCATTGAATATGGTAACTGAAAAGTTTTGTTGATTAGGTTTAAATAACGTTATTAATTTATGTATTTAGGTTTCTGTGA

Fln Alignment:

sp_v1.1_unigene28861___WSWHKEDVGIWGKDHFSGQGLLEQLYTVLDKSDFLWYTISVNIDENEPFLKNGSQLILQVVTRGHALHVFANGNFVGTQSGNDSNNNFTYEKPVTLKAGKNQIALLSVTVGQANYGPFFDTWTAGINGPVKLLGLKNGPLDLTDQTWDYQIGVKGEHLKLYSDAGAKRVEWISGADPPKQAALTWYKTEFNAPEGNDAVALDFSTLSKGQAWVNGNHIGRYFPTLKAPADECSEVCDYRGPYEPSKCVTNCGQPTQTLYHVPRSWLQPTKNVLVLLEEVGGDPTGISLRKRQVDTVCAHVSQDH-----PTGNSSTS--------PELRLQCSSGQH-ISSISFASFGNPTGYCGNFIKGSHDAGSSTSLVENACVGNEACSISVSEDVFESHFDEHVIKSLAVEAVC
A9NUR2_______________WSWLHEQIGIGGSNTFSKPGLLEQINTTVDSSDYLWYTTSIQVDDNEPFLHNGTQPVLHVQSLGHALHVFINGEFAGRGAGSSSSSKIALQTPITLKSGKNNIDLLSITVGLQNYGSFFDTWGAGITGPVILQGFKDGEHDLSTQQWTYQIGLTGEQLGIYSGDTKASAQWVAGSDLPTKQPMIWYKTNFDAPSGNDPVALNLLGMGKGVAWVNGQSIGRYWPSYIASQSGCTDSCDYRGAYSSTKCQTNCGQPSQKLYHVPRSWIQPTGNVLVLFEELGGDPTQISFMTRSVGSLCAQVSETHLPPVDSWKSSATSGLEVNKPKAELQLHCPSSRHLIKSIKFASFGTSKGSCGSFTYGHCNTNSTMSIVEEACIGRESCSVEVSIEKFGDPC-KGTVKNLAVEASC

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
988			28	71	1.0
990		28		71	1.0
992		71		28	1.0
993	71		28		1.0
995		25	75		1.0
1002	75	25			1.0
1003	75			25	1.0
1004	75		25		1.0
1007	25	75			1.0
1008	75	25			1.0
1009	75			25	1.0
1011	25			75	1.0
1202	10		90		0.90298
1205		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain