SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28849

Length: 1768 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28849

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T1Y8_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	transducin family protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	73%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	73%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	73%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	73%
Blast2go	WD40-repeat-containing domain	IPR017986	-	73%
Blast2go	WD40 repeat, subgroup	IPR019781	-	73%
Blast2go	WD40 repeat 2	IPR019782	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8L3

Fln msg: your sequence is longer than subject: 378 - 201

Fln protein: MPFTDDRSVVTCAADGQVRHAQILENGQVETKRLAKHRGRTHKLAIEPGSPHVFYSCGEDGAVQHFDLRSHTATKVLTCHTFVGNKSQSIEHVRLNAIVIDPRNPYYFAIGGSDEYARVYDIRSCHQDSLTNQDCPVDFFSPQHLIDNDHVHITGLAYSNQGELLVSYNDELIYLFQKEMSLGPNPKSVSVEARNELEAPQVYKGHRNAQTVKGVNFFGPNTEYVVSGSDCGRIFIWKKKGGELVHLMKGDQHVVNCLEPHPYTTILATSGIEKNVKIWAPTAEQLISLPDNVEEIMEANKQGREDRSRISLTPDVIMRVLRLQRRQYQPNVESRYSRADFEGEDDDVDEYVLLEPLHRDDSSDDDGNLNSQECIIS*

Protein Length: 379

Fln nts: ATTCGGCACCTGGAGCTCTATGCAAAGCTGGAAGCACATGATGGTTGTGTAAATACTGTACAGTTCAATCCAACTGGCAATATACTTGTGTCAGGGTCTGATGATAAACAGATCATATTTTGGGATTGGGATGCTAAAACTAAAGTATTTAGTTTTCCTTCTGGTCATGGAAGTAACGTATTTCAGGCCAGGATT_-_ATGCCTTTCACGGATGACCGCAGTGTTGTTACATGTGCTGCAGATGGACAGGTAAGGCATGCCCAAATCCTGGAAAATGGTCAGGTTGAGACAAAACGGCTAGCAAAGCATCGTGGGCGTACTCATAAACTTGCAATAGAGCCTGGAAGTCCCCATGTCTTTTACAGCTGTGGTGAAGATGGAGCTGTCCAGCATTTTGATTTGCGAAGCCATACTGCAACCAAGGTTTTAACTTGCCATACCTTTGTGGGGAACAAGTCACAGTCCATCGAACACGTGCGACTAAATGCAATAGTGATAGATCCGAGAAATCCATATTATTTTGCAATTGGTGGCTCTGATGAATATGCTCGTGTTTATGACATCAGAAGCTGTCATCAGGATTCTTTGACAAATCAAGATTGCCCTGTAGATTTCTTCTCACCTCAACATCTGATTGACAATGACCATGTCCACATTACTGGTCTAGCTTATTCTAACCAAGGGGAGTTACTTGTCTCTTACAATGATGAACTTATTTACTTGTTTCAGAAGGAAATGAGTCTGGGCCCAAACCCAAAATCAGTGTCAGTTGAGGCAAGGAATGAATTAGAAGCCCCACAGGTTTATAAGGGACATCGAAATGCACAGACTGTGAAGGGTGTAAATTTCTTTGGCCCTAACACAGAGTATGTAGTTAGTGGGTCTGATTGTGGTCGGATATTCATCTGGAAGAAGAAGGGGGGTGAGCTGGTACATTTGATGAAAGGTGACCAACATGTGGTTAACTGTCTGGAGCCTCATCCCTATACAACTATACTTGCTACAAGTGGGATTGAGAAAAATGTAAAAATATGGGCCCCTACTGCAGAGCAATTGATTTCACTCCCAGATAATGTTGAAGAGATAATGGAAGCCAACAAGCAGGGCAGAGAGGATCGCTCACGTATCAGTCTTACACCAGATGTAATTATGCGCGTGTTAAGATTACAAAGACGACAATATCAACCAAATGTTGAGAGTAGGTATTCAAGAGCAGATTTTGAAGGCGAGGATGATGATGTGGATGAGTATGTTCTTTTGGAACCATTGCATCGTGATGACTCATCCGATGATGATGGTAATTTGAATTCTCAAGAGTGTATAATTAGTTGA___AATTCTCTCCTTTGGCGTCTAGAGAGGGGCAGTTTAATTAGCCACTTTATATTTGAAAATATTAGGTATTTTTAATTTTCAACTCAGAAAATGTGGGAATTCTGTTCCATGAGAAGATTGATATTGTGCAATAGTGTGCAAGAATTTTTGTGCACAGGAGGGTTTCAGCTGCTGGATCTCGCTGCTGGAAGAATTGTTTTGGTTCATCTTGTGTGTTCAAGAGTTATGTTTCAATAATTTCTGAGGATTTGTTTCTAGCAATAGTTTTCGAAAGAATTCTTCCTGTCAAATTTGTAGGGCAGTCTTAATAGATTTATTTTGTAGTTGTCAAGGCGTTGGGTTATTTATTTCAATGCATTTACAGGAATGTTGCTTGTGCCATTTATGTGCTAGACCTTGAGATTTGAGTTGGTTGTAACTTGTATATATTTCTGAATTT

Fln Alignment:

sp_v1.1_unigene28849___MSLGPNPKSVSVEARNELEAPQVYKGHRNAQTVKGVNFFGPNTEYVVSGSDCGRIFIWKKKGGELVHLMKGDQHVVNCLEPHPYTTILATSGIEKNVKIWAPTAEQLISLPDNVEEIMEANKQGREDRSRISLTPDVIMRVLRLQRRQYQPNVESRYSRADF
D5A8L3_______________MGLGPNPNSASSEMSEDLEAPQVYEGHRNAQTVKGVNFFGANTEYVVSGSDCGRIFIWKKKGGQLVHLMKGDKEVVNCLEPHPYATILATSGIEKNIKVWSPTASHLIPLPDNVEELMEANKRKREQHARISFTPDVIMHVLRLQRRVSKRDGDRRISREDF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1118		85		14	0.993533
1132	85		14		0.993533
1336	75	25			1.0
1509		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain