SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28790

Length: 1824 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28790

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RMJ9_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	dna binding protein gt-1	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SANT/Myb domain	IPR001005	-	0.0	74%
Blast2go	Myb-like domain	IPR017877	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQR4

Fln msg:

Fln protein: MEVVTNGLQPPTMHSAAQQQTQMILADSSGEDHEVKAPKKRAETWVQEEIKALIALRREMDSLFNTSKSNKHLWEQISLKMRERGFDRSPTMCTDKWRNLLKEYKKVKHQDRGGGSAKMSCYKDLEELLRERAKNAAYKTPPAAAAAKMDTYIHFSPKGSGKSSLNLERRLDHDGHPLAIASVDATAANGVPPWNWRDATANGDHHTSYGGKVIVVKCGEFTRRIGVDGTAEAIKEAVKCAFGLRTRRAFWLEDEDGVVRCLDRDMPLGTYILHLDDGLTIKICTYDESDRLTGATEEKTLYTEEDFRDFLTRRGWSGLQEVGGFRAIDSLDDLRPLCVYQRAGLLGE*

Protein Length: 350

Fln nts: AGAGGAGAGGGACGATAATT_-_ATGGAGGTTGTGACGAACGGCTTGCAGCCGCCCACGATGCACTCGGCGGCCCAGCAGCAGACGCAGATGATTTTGGCGGACAGCAGCGGGGAGGATCATGAGGTGAAGGCCCCGAAAAAGAGGGCCGAGACGTGGGTTCAGGAGGAAATCAAAGCTCTTATTGCCTTGAGGCGGGAGATGGACAGCCTATTTAATACTTCTAAGTCGAACAAGCATCTCTGGGAGCAAATTTCGCTGAAAATGAGGGAACGAGGGTTTGATAGGTCGCCTACTATGTGCACTGATAAATGGCGGAACTTGTTGAAAGAGTACAAGAAGGTAAAGCATCAGGACCGGGGCGGCGGATCTGCGAAGATGTCGTGTTACAAGGATTTAGAGGAATTACTGAGGGAGAGAGCCAAGAATGCGGCATACAAGACGCCTCCGGCCGCAGCTGCTGCAAAGATGGACACTTACATTCATTTTTCGCCCAAAGGAAGTGGGAAGTCGTCACTCAATCTAGAACGCAGATTAGATCATGATGGACATCCTTTGGCAATAGCATCAGTTGATGCAACTGCTGCCAATGGGGTACCGCCATGGAATTGGAGGGATGCCACTGCAAATGGTGATCATCACACGTCTTATGGAGGGAAGGTGATTGTGGTAAAGTGTGGGGAATTTACGAGGAGGATTGGTGTTGATGGCACAGCTGAAGCTATCAAAGAAGCTGTTAAATGTGCATTTGGGTTGCGTACCAGGAGGGCGTTTTGGTTAGAAGATGAAGATGGAGTTGTGCGTTGCCTTGACAGAGATATGCCCTTGGGGACATATATACTTCATCTGGATGATGGTTTGACTATCAAGATCTGCACTTACGATGAATCTGATCGTCTGACGGGTGCCACTGAAGAGAAGACCTTGTACACTGAAGAAGATTTTCGTGATTTTCTCACACGACGTGGTTGGTCTGGTTTGCAAGAAGTTGGTGGATTTAGAGCGATTGATTCTCTGGATGATCTTCGTCCCTTATGTGTATATCAACGTGCGGGGTTGCTGGGGGAGTAG___TTTAAACTGGCATCTGTTTGTGCACAAACTAGCAGGGTATGCAGATGATCCACATGCAATCCTAAACTTGCTTTGGAGACTGCAATGTAAGCCTATGCCTCCTGCATAAGACATTGTACACTAATGATACTCTTAAGAATATGAGTTTTCGATAGCTCACATGACTTCTAGCGCATTCAGGTGAGCATCCAGTTATAGACAGCTATAAAATTAAGATGGAGATTGTTCAGCGCTGTACAGCAACCACATGCTTATGTTACTTGCAGACTGAATGGAAGAGCATTTCTTTCCATGTAGGTTCTAGTGTATTATTATAGGATTGCAACCAGGAAAGCATTTACAAGGGTTTGAATGCGATGTTTCTGATTTGAGATGTAGCCATAATCTCATCTTCTGTCATTTCCCAGGCAGAAAGGGCTCATATATATATTTATGAGAAACCATGTCATACAGTAAAATGATTAGTTTTGGGAAGAGAGAAGTTGAGAAGAGTGATTGGACTGCTTTTTCATTCTGCAGTTTATATACTGCGCAAGGCATTGGAATCTTAAGGGAAATAATAGGTGTCTGGGATGCCGCACTTGCAACTTTTAGGATTATTTGCTAAATCCTCTCATTCTAGTGCAAGCTTTCATACTACAGTGAAGCTGTAAACTGGTAAAAATTACACAGCTTGGAAAACTATGAGAGCACAGTCAAACTTGTAATGTAATCTTCATTGTACTTGTTGAATGATATATATTCTTAGTATAACCTC

Fln Alignment:

sp_v1.1_unigene28790___MEVVTNGLQPPTMHSAAQQQTQMILADSSGEDHEVKA-PKKRAETWVQEEIKALIALRREMDSLFNTSKSNKHLWEQISLKMRERGFDRSPTMCTDKWRNLLKEYKKVKHQ-DRGGGSAKMSCYKDLEELLRERXXXXXXXXXXXXXXXXMDTYIHFSPKGSGKSSLNLERRLDHDGHPLAIASVDATAANGVPPWNWRDATANG-DHHTSYGGKVIVVKCGEFTRRIGVDGTAEAIKEAVKCAFGLRTRRAFWLEDEDGVVRCLDRDMPLGTYILHLDDGLTIKICTYDESDRLTGATEEKTLYTEEDFRDFLTRRGWSGLQEVGGFRAIDSLDDLRPLCVYQRAGLLG
A9NQR4_______________MEVVTNGMQLQAQVQQQHHHHMLLSSDVNGEDHEIKTTPKKRAEVWGHDEIRSLIALRREIDGLFNTSKSNKHLWEKISLKMRERGFDRSPTMCTDKWRNLLKEYKKAKHHHDSHDGSAKMSCYKDLEELLRERAKVAPYRSPNKVAA--LDSYPHFSPKGTGRSPFNLERRLDHDGLPLALPLSDATAANGTPPWNWRDATGNGGENHTSYNGKVILVKWGDITRRIGIDGTAEAISGAIRPAFGLRTKRAFWLQDEDGVVHSLDRNMPLGTYILCLDEGLTIKVCNYDESDSLTGTADEKTFYTEEDFRYFLTQRGWSGLQEVGGFRTVDSLNELCPMCVYQRAGSLG

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
671	50		50		1.0
1010	14			85	0.993533
1013	14		85		0.993533
1014		14	85		0.993533
1206	83		16		0.994512
1280	85			14	0.993533
1349	87		12		0.992554
1364			87	12	0.999964
1413	15		84		0.999986
1498	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain