SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28781

Length: 1253 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28781

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin reductase n=1 Tax=Ginkgo biloba RepID=Q5XLY0_GINBI	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	dihydroflavonol 4-reductase	-	-	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	64%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRT5

Fln msg:

Fln protein: MSEQRRDCTVCVTGAGGFIASWLIKGLLLRGYNVNGTVMDPGDERETAHILSLPGAKERLRLFKADLLEKGSFDTAVQGCEFVILLATCMDFTVDAEAQTSVVESEVKGTLEILKACANAKSVRRVIYTSSINAASPLNDNGKFRDCIDESCWTPVDLIRREKPLFWMYYVAKALSEQAALQYGSDHGIEVVTMAPALVSGPSLTPTLPTSIQETLGLITGSQEPYEWLKEFQWLMGSIALVHIDDLCDAYIFLMEHQSAKGRFICCAQDLSLKELWDFCNKRYSQFCPPLQYPKGDDFLNHVPVSSKRLLDLGFSYKYGLPEIFDESIEFAKTIGILQ*

Protein Length: 341

Fln nts: AAACTCATTCAGTCATTACTCATTATTGTTCTATCTTCTTTTAGATATTCCTTGTTCTAAACCTTATCTTCTTATATTTCGTTCCAACTTTCCAAATTCACTCATTTGCAATCCGACAATCCTGTTGAAGCCAGGGACAAAGACG_-_ATGAGCGAGCAAAGAAGAGACTGCACTGTATGTGTGACGGGAGCAGGAGGTTTCATTGCCTCATGGCTAATCAAAGGGCTTCTGCTCCGGGGATACAATGTCAATGGCACTGTCATGGATCCAGGGGACGAACGCGAGACTGCCCATATTCTGTCGCTTCCGGGAGCCAAAGAGAGGCTTCGGCTCTTCAAAGCGGATCTCCTCGAAAAGGGCAGCTTCGATACTGCCGTTCAGGGCTGTGAGTTCGTCATTCTCTTGGCGACATGCATGGATTTCACCGTAGACGCAGAGGCACAGACATCTGTTGTGGAGTCTGAGGTTAAAGGGACTCTAGAGATTTTGAAGGCTTGTGCAAACGCAAAATCTGTTCGCCGTGTAATATACACTTCCTCCATAAACGCAGCTTCTCCGTTGAATGACAACGGAAAATTCAGGGACTGCATTGACGAATCCTGCTGGACTCCTGTCGATCTCATCAGGCGTGAAAAGCCACTTTTCTGGATGTATTATGTGGCGAAGGCATTATCAGAGCAAGCAGCTCTTCAGTATGGATCGGATCATGGCATTGAAGTGGTGACAATGGCGCCAGCCCTAGTTTCTGGACCTTCTCTTACACCTACGCTTCCTACCAGCATTCAAGAAACTTTAGGATTGATCACAGGGAGTCAAGAACCTTACGAATGGTTAAAGGAGTTCCAATGGCTCATGGGTTCCATTGCATTAGTCCACATAGACGATTTATGTGATGCCTACATATTCTTGATGGAGCATCAATCTGCAAAAGGTCGATTTATATGCTGTGCTCAAGATCTCTCTCTCAAGGAGCTGTGGGATTTTTGCAATAAACGCTATTCACAATTCTGTCCACCACTCCAATATCCAAAGGGAGATGATTTTCTTAACCACGTGCCTGTTTCATCCAAAAGATTGTTGGATTTGGGCTTCTCCTACAAGTATGGCTTACCAGAAATTTTTGATGAAAGCATTGAATTTGCTAAAACGATAGGCATATTGCAATAA___CACGTAGATTATCATTTCTTTAAGAATTGTGGACAATAGTATGGAAAAGGAATCTATATCAATCATACTAATCAGTTTGTTGGGAGAT

Fln Alignment:

sp_v1.1_unigene28781___RDC---TVCVTGAGGFIASWLIKGLLLRGYNVNGTVMDPGDERETAHILSLPGAKERLRLFKADLLEKGSFDTAVQGCEFVILLATCMDFTVDAEAQTSVVESEVKGTLEILKACANAKSVRRVIYTSSINAASPLNDNGKFRDCIDESCWTPVDLIRREKPLFWMYYVAKALSEQAALQYGSDHGIEVVTMAPALVSGPSLTPTLPTSIQETLGLITGSQEPYEWLKEFQWLMGSIALVHIDDLCDAYIFLMEHQSAKGRFICCAQDLSLKELWDFCNKRYSQFCPPLQYPKGDDFLNHVPVSSKRLLDLGFSYKYGLPEIFDESIEFAKTIGIL
B8LRT5_______________QDCKGTTVCVTGASGFMASWLVKRLLQKGYTVHATVRDPENEAKVRHLLDISGAAERLKLFRAELSEDGSYDAAVAGCHGVFHVATPIDFE-PKDPENDVIKPAINGTLNVLKSCTKSKTVKRVVVTSSAATVS-INESAEQNQYIDESCWTDVDFLQTKKPPTWSYPVSKTLAEQAALQYGKEQGLDVVTIIPVLVVGPSITPSVPSSVQLALSFLTGNPHTLQAIKGMQLVSGSVSLVHVDDVCSAHIFLMENPSAEGRHICCPINTSVPQLAKYLSKRYPQYNVPTQFEDVPQTAK-VNISSKKLVESGFSFKFGIDEIYDDAVEYFKTKGLL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
281	12		87		0.999964
304		12		87	0.999964
340		13	86		0.999973
341	13		86		0.999973
357	15		84		0.999986
374		15	84		0.999986
379	15		84		0.999986
393		15		84	0.999986
410		15		84	0.999986
411		15	84		0.999986
425	15		84		0.999986
437	15		84		0.999986
446	16			83	0.999991
458			20	80	0.999996
460	22			77	0.999999
476	28	71			1.0
481			71	28	1.0
502	28	71			1.0
557		33		66	0.997452
563	33		66		0.997452
568		66		33	0.997452
587	66		33		0.997452
607		33		66	0.997452
768			25	75	0.996473
771		75	25		0.996473
779	75		25		0.996473
782	75			25	0.996473
783			25	75	0.996473
788	75			25	0.996473
789		25	75		0.996473
807	75		25		0.996473
1175		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain