SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28738

Length: 1079 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28738

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lysine histidine transporter-like 8 n=5 Tax=rosids RepID=LHTL8_ARATH	-	-	69%
FL-Next	sp=Lysine histidine transporter-like 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	lysine histidine transporter	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid transporter, transmembrane	IPR013057	-	0.0	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9SX98

Fln msg: Distance to subject end: 314 aas, your sequence is shorter than subject: 248 - 519

Fln protein: MEESGGERELVSIPPTPMGATPPFTPGAHSPHHQISTNSHSHAVTPGQRSPRPSQTPASTRPPSSLVSPSMPRSPLLKTPRTPRTPWTPSLISPRFLSPIGTPMKRVLTNMKTYLEEVGHLTKLNPQDAWLPITESRNGNAYYAAFHNLNAGIGFQALILPVAFTFLGWSWGIICLTIAYLWQLYTLWVLIMLHEAVPGKRYNRYVELAQAAFGERLGVWLTLFPTVYLSAGTATALILIGGETMKLF

Protein Length: 249

Fln nts: GGCGAGAAAGCAATGGCGGCCACATGTGTCCAGGCTCACATGATCTCCATACCAAGAAAATACAACCATATAGAATTAATAATACTCCGGGCCTCTGGACTTGCACGTTTGTCGCACCTGGGAAGGTGTAGCAGGAGCTCATACTATCATTACAGTTTGACTGCACGCAAATATCTTACTCGATGACAGTGGAACTGACCATGATGATGGCGAATTAGGAAGAGGAGAATCTCGTGAACAGAGAAGTAATGTGAGGGCGCAGAAATCTAAGGAAGAAGAGGATTCATCTGAGGATTCTGAGAGGAGCTTCAGGTTGCAGGCACCTTTCGGGACA_-_ATGGAGGAATCAGGGGGAGAACGAGAACTGGTGTCAATACCGCCCACGCCCATGGGAGCCACTCCCCCTTTCACCCCTGGTGCTCATTCTCCCCACCACCAGATTTCTACCAATTCTCATTCTCATGCTGTTACCCCTGGGCAGAGATCCCCCAGACCTTCCCAGACACCTGCCAGCACTCGCCCTCCTTCGTCCTTGGTGTCCCCTTCCATGCCCAGGTCCCCTCTGCTCAAGACTCCCAGGACTCCAAGGACACCATGGACTCCTTCCCTTATCTCTCCGAGGTTTCTGAGCCCCATTGGGACTCCCATGAAAAGGGTTTTGACCAATATGAAGACCTATCTGGAGGAGGTTGGGCACCTCACCAAGCTCAATCCTCAGGATGCGTGGCTCCCCATCACAGAGTCCAGGAATGGGAATGCTTACTATGCGGCGTTTCATAATCTCAATGCAGGGATTGGGTTTCAGGCCTTGATTCTGCCAGTGGCTTTTACGTTCTTGGGATGGAGCTGGGGAATAATTTGTCTGACCATAGCATACCTGTGGCAACTCTACACTCTGTGGGTTCTTATCATGCTTCATGAAGCTGTGCCGGGGAAACGCTACAACAGATATGTGGAGCTTGCGCAAGCTGCATTTGGGGAGAGGCTTGGTGTATGGTTGACTCTGTTTCCAACTGTTTATCTATCAGCCGGGACGGCAACTGCCCTGATACTGATCGGTGGAGAGACAATGAAGCTGTTTT

Fln Alignment:

sp_v1.1_unigene28738___ERELVSIPPTPMGATPPFTPGAHSPHHQISTNSHSHAVTPGQRSPRPSQTPAS-TRPPSSLVSPSMXXXXXXXXXXXXXXXXXXXXISPRFLSPIGTPMKRVLTNMKTYLEEVGHLTKLNPQDAWLPITESRNGNAYYAAFHNLNAGIGFQALILPVAFTFLGWSWGIICLTIAYLWQLYTLWVLIMLHEAVPGKRYNRYVELAQAAFGERLGVWLTLFPTVYLSAGTATALILIGGETMKLF
Q9SX98_______________ETELISIPATPRVSTP-----------EILTPS-------GQRSPRPATKPSSATWTPTSF-------------------------ISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATALILIGGETMKLF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
124	75			25	0.996473
127			25	75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain