SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28732

Length: 1970 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28732
GCCGACTTGCGTATGAAACAGAGAAAGTCTGTAGATTTGGGCTTGCAGTCAAGGTCTCGAAGAATTCTGCTGCTCTACAACCCAAACCCTAGTGAGTATTTTTGACGCAAGCTGCGATTGCTTTTAGCTTAAATTTCTATTGGTCTTGTGACCTGTTGGTGAGCTTTGACACAAGCAGTCCATCAGTTAAGAGGATTCCGGGGCACAATAATCCATTTATTTTAATCGTGGATAGCCATTAAAGACGGCAGGGATGCAGACTAAAGCGGCCGCTGAAGGGCGGCTTCATTCGGGCCCTACAGGCCGAGTGAGTGTTGTGGTGGAGGGTGGGATTTCGCCGCAGAGGGCACAGTTGGCTGGCCCTACAGAGTCTTTGAATAGCTCAGACCAGCTCCAGCATGGTGATGTAGACAGAGGTGTGAAAAGGTTTGTGAGGCAATCGGTACAGCATTCGCAGATTGGTACAATTTCACAGCTTTTAGCAGGAGGTGTTGCAGGTGCTGTCAGCAAGACCTGCACTGCTCCATTGGCTCGGCTTACCATTCTGTTTCAGGTTCAAGGCATGCACTCTGATGGTGCGTGTTTGCATAAAGCAAGTATTTTCCGTGAAGCATCCCGGATTGCTTCTGAAGAAGGAGTCAGGGCTTTTTGGAGGGGAAATTTGGTCACAATTGCTCATCGACTTCCTTATTCATCCATTAGTTTTTACACGTATGAGAAATACAAATCAATTATGCAGTCACTGCCTGGCATGGAAAAACATAGAGAGAATCTTAGCACAGACCTTTGTATTCGTTTATTAGGTGGTGGTGCTGCAGGAGTAACAGCTGCATCAATCACATATCCATTGGATCTTGTGAGGACTCGGTTAGCAGCACAGACAAATGTCTTATACTATAGAGGTATTACACATGCCCTCTATACCATTTGCAGAGATGAAGGCATCAAGGGGTTGTACAAAGGCCTTGGGCCAACTTTATTGGGAGTTGGACCTAATATAGCTATTAGCTTCTGTGTTTATGAGAGCCTTAAATCTGCTTGGGAGTATGAGAGACCTCAGGATTCACCTATTGCGGTTAGCTTGGCATGTGGTAGTCTTTCAGGTGTTGCATCCTCAACAGCAACATTTCCACTTGATTTGGTGAGGAGAAGAATGCAGCTGGAAGGTGCAGGTGGACGTGCTCGTGTCTACAACACGGGACTTCTTGGCACATTCAGACAGATAGTCCGAACAGAAGGATGGGCTCGTTTATACAGGGGAATTCTTCCAGAGTACCTCAAAGTTGTTCCAAGTGTTGGTATTGTGTTTATGACTTACGAAATCATGAAAGTGCTTCTCACTGAAAGGCATTCGAAGGAATAAATATTATTTCCAGGCTGGCCTCCTGCACCGTCTAAAGAGGATGATCAGATATCTTGTAGTCCTAATATATTTTACATTCGAGGTATATAAAATTCTTTACCAGGCTTTATATTAGAGATCTGTCAGTTGTACATTGGAAAGATGTATTTGTATGCTCGAGGGTGAATCTTTCAAGCAATCTTCTTATGGCATGCACCCCTTCGATTCTCTGAATATAATAGTATACTAACTTGACATGACATGTTGTTCCTCCTTGGATGGACAAGTTTTGGGCTGTCAACGGACAGCAACCGATTTTTTTTCATGGATGGCAAGCAATGCCGCTTATTTTATGGTTTTCAATTTTGAGATTATTACATTTGATGATTTGACACAAGGCAGTCATCAGGTGTTGTTCGATGCGTGAACAATGGCACATGCTGCCTGGCTAATTGTAAAGTAAAAGAAAATGTCATTTGCCAAAGGTAAAAATAGTATGGACTTGCAGCATAAAGTGTCGACTGTGCAGTTAATGGCATATTTTGAAAGTTAATAGCGCTATGATTATTGATAAAAATGATCTCATTCCTTACTGTACACTAGATTTGTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene28732

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial deoxynucleotide carrier, putative	-	-	60%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	68%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Blast2go	Mitochondrial carrier protein	IPR002067	-	79%
Blast2go	Mitochondrial substrate/solute carrier	IPR018108	-	79%
Blast2go	Mitochondrial carrier domain	IPR023395	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HC54

Fln msg:

Fln protein: MQTKAAAEGRLHSGPTGRVSVVVEGGISPQRAQLAGPTESLNSSDQLQHGDVDRGVKRFVRQSVQHSQIGTISQLLAGGVAGAVSKTCTAPLARLTILFQVQGMHSDGACLHKASIFREASRIASEEGVRAFWRGNLVTIAHRLPYSSISFYTYEKYKSIMQSLPGMEKHRENLSTDLCIRLLGGGAAGVTAASITYPLDLVRTRLAAQTNVLYYRGITHALYTICRDEGIKGLYKGLGPTLLGVGPNIAISFCVYESLKSAWEYERPQDSPIAVSLACGSLSGVASSTATFPLDLVRRRMQLEGAGGRARVYNTGLLGTFRQIVRTEGWARLYRGILPEYLKVVPSVGIVFMTYEIMKVLLTERHSKE*

Protein Length: 371

Fln nts: GCCGACTTGCGTATGAAACAGAGAAAGTCTGTAGATTTGGGCTTGCAGTCAAGGTCTCGAAGAATTCTGCTGCTCTACAACCCAAACCCTAGTGAGTATTTTTGACGCAAGCTGCGATTGCTTTTAGCTTAAATTTCTATTGGTCTTGTGACCTGTTGGTGAGCTTTGACACAAGCAGTCCATCAGTTAAGAGGATTCCGGGGCACAATAATCCATTTATTTTAATCGTGGATAGCCATTAAAGACGGCAGGG_-_ATGCAGACTAAAGCGGCCGCTGAAGGGCGGCTTCATTCGGGCCCTACAGGCCGAGTGAGTGTTGTGGTGGAGGGTGGGATTTCGCCGCAGAGGGCACAGTTGGCTGGCCCTACAGAGTCTTTGAATAGCTCAGACCAGCTCCAGCATGGTGATGTAGACAGAGGTGTGAAAAGGTTTGTGAGGCAATCGGTACAGCATTCGCAGATTGGTACAATTTCACAGCTTTTAGCAGGAGGTGTTGCAGGTGCTGTCAGCAAGACCTGCACTGCTCCATTGGCTCGGCTTACCATTCTGTTTCAGGTTCAAGGCATGCACTCTGATGGTGCGTGTTTGCATAAAGCAAGTATTTTCCGTGAAGCATCCCGGATTGCTTCTGAAGAAGGAGTCAGGGCTTTTTGGAGGGGAAATTTGGTCACAATTGCTCATCGACTTCCTTATTCATCCATTAGTTTTTACACGTATGAGAAATACAAATCAATTATGCAGTCACTGCCTGGCATGGAAAAACATAGAGAGAATCTTAGCACAGACCTTTGTATTCGTTTATTAGGTGGTGGTGCTGCAGGAGTAACAGCTGCATCAATCACATATCCATTGGATCTTGTGAGGACTCGGTTAGCAGCACAGACAAATGTCTTATACTATAGAGGTATTACACATGCCCTCTATACCATTTGCAGAGATGAAGGCATCAAGGGGTTGTACAAAGGCCTTGGGCCAACTTTATTGGGAGTTGGACCTAATATAGCTATTAGCTTCTGTGTTTATGAGAGCCTTAAATCTGCTTGGGAGTATGAGAGACCTCAGGATTCACCTATTGCGGTTAGCTTGGCATGTGGTAGTCTTTCAGGTGTTGCATCCTCAACAGCAACATTTCCACTTGATTTGGTGAGGAGAAGAATGCAGCTGGAAGGTGCAGGTGGACGTGCTCGTGTCTACAACACGGGACTTCTTGGCACATTCAGACAGATAGTCCGAACAGAAGGATGGGCTCGTTTATACAGGGGAATTCTTCCAGAGTACCTCAAAGTTGTTCCAAGTGTTGGTATTGTGTTTATGACTTACGAAATCATGAAAGTGCTTCTCACTGAAAGGCATTCGAAGGAATAA___ATATTATTTCCAGGCTGGCCTCCTGCACCGTCTAAAGAGGATGATCAGATATCTTGTAGTCCTAATATATTTTACATTCGAGGTATATAAAATTCTTTACCAGGCTTTATATTAGAGATCTGTCAGTTGTACATTGGAAAGATGTATTTGTATGCTCGAGGGTGAATCTTTCAAGCAATCTTCTTATGGCATGCACCCCTTCGATTCTCTGAATATAATAGTATACTAACTTGACATGACATGTTGTTCCTCCTTGGATGGACAAGTTTTGGGCTGTCAACGGACAGCAACCGATTTTTTTTCATGGATGGCAAGCAATGCCGCTTATTTTATGGTTTTCAATTTTGAGATTATTACATTTGATGATTTGACACAAGGCAGTCATCAGGTGTTGTTCGATGCGTGAACAATGGCACATGCTGCCTGGCTAATTGTAAAGTAAAAGAAAATGTCATTTGCCAAAGGTAAAAATAGTATGGACTTGCAGCATAAAGTGTCGACTGTGCAGTTAATGGCATATTTTGAAAGTTAATAGCGCTATGATTATTGATAAAAATGATCTCATTCCTTACTGTACACTAGATTTGTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene28732___RVSVVVEGGISPQRAQLAGPTESLNSSDQLQHGDV-DRGVKRFVRQS-----VQHSQIGTISQLLAGGVAGAVSKTCTAPLARLTILFQVQGMHSDGACLHKASIFREASRIASEEGVRAFWRGNLVTIAHRLPYSSISFYTYEKYKSIMQSLPGMEKHRENLSTDLCIRLLXXXXXXXXXXSITYPLDLVRTRLAAQTNVLYYRGITHALYTICRDEGIKGLYKGLGPTLLGVGPNIAISFCVYESLKSAWEYERPQDSPIAVSLACGSLSGVASSTATFPLDLVRRRMQLEGAGGRARVYNTGLLGTFRQIVRTEGWARLYRGILPEYLKVVPSVGIVFMTYEIMKVLLT
B9HC54_______________RVGAVVEGG---QRA--------LNSAAAAAHGSILDAGARRFLQQQHNNSHQQHSQLGTIQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDVTALSKASIWREASRVMNEEGFRAFWKGNLVTIAHRLPYSSVSFYAYERYKSLLQSVLGVENHGGNGTADLAVHFIGGGMAGITAASATYPLDLVRTRLAAQRNTIYYRGILHAFHTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQ---PNDSTVMASLACGSLSGIASSTATFPLDLVRRRMQLEGAGGRARVYTTGLFGAFAHIIQTEGLRGMYRGILPEYYKVVPGVGIVFMTYETLKMLLS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
940	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain