SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28731

Length: 2251 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28731
TGGAGAAGAATCAGACCATGATTTTGGTCGGAGAAACTGGAAGTGGCAAGACCACACAGATTCCTCAGTTTGTGGTTGAGGCGGGATACACTTCAAATCGCAAACAGATTGCCTGTACTCAGCCTCGTAGAGTGGCAGCAATGTCTGTATCTCGACGAGTGGCTGAGGAAATGGATGTGACAATTGGGGAAGAAGTTGGTTACAGTATTCGATTTGAAGATTGCAGCAGCTCAAAGACTGTTCTTAAGTATTTGACAGATGGTATGCTTCTTAGGGAAGCAATGACTGACCCATTATTAGAGCGGTATAGGGTGATCATTCTTGATGAGGCACATGAGAGAACCTTGGCTACTGATGTTCTTTTTGGCCTTCTAAAGGAAGTTTTAAGAAATCGACAAGATTTGAAGCTTGTTGTTATGAGTGCTACTTTGGAAGCTGAAAAGTTCCAAGCTTATTTCAATGTTGCTCCTCTCATGAAAGTACCTGGCAGATTACATCCAGTTGAGATATTCTACACTCAGGAACCAGAGAGGGATTATCTTGAAGCGGCAATTAGGACAGTTGTACAGATACATACGTGTGAGACACCTGGGGACATACTTGTTTTTCTTACTGGAGAAGAGGAAATAGAAGATGCATGTAAGAAAATTACAAAAGAGATTCAGAACCTGGGTGATCAGGTTGGGCCTGTGAAAGCTGTTCCACTCTATTCAACCCTACCCCCAGCAATGCAGCAAAAGATTTTTGAACCAGCTCCACCACCATTGAGGGAAGGTGGTCCTCCTGGAAGAAAAGTTGTGGTGTCAACTAACATTGCAGAAACTTCCTTGACAATTGATGGGATAGTTTATGTGATTGATCCTGGTTTTGCAAAGCAAAAAGTTTACAACCCTAGAATACGTGTGGAGTCTTTACTAGTTTCACCGATATCAAAGGCAAGTGCTCATCAAAGATCAGGGCGTGCGGGTAGAACACAGCCAGGAAAATGCTTCAGACTTTATACAGAAAAGAGTTTCCATAATGATCTTCAAGCACAGACATACCCTGAGATTTTACGTTCCAATCTAGCAAATGTGGTTCTTAATCTGAAGAAGTTGGGGATTGACGACTTAGTACACTTTGACTTTATGGACCCACCTGCTCCAGAAACTCTGATGCGAGCATTGGAGACTTTGAATTATTTGGGTGCTTTAGATGATGAGGGAAATCTAACCAAGTTGGGAGAATTAATGAGTGAGTTTCCTTTGGATCCTCAAATGTCAAAAATGTTAGTTGTCAGCCCAGAATTCAACTGCTCCAATGAAATTCTTTCCATCACTGCAATGCTATCAGGTATGTTTTTATATTCCAGTGCACAATATGTAATTACTGAGTTATTGTCTGGCTTTTGCGTGTATTCTATGCTGTCTAGTTGTCTCTCCCCAGTCATGCATTTCTAGGGTAGCAATAAATAGGCACTCAGTACTAGTTGTTCTGCATTTGCATCAAAGCATCATCCATGCTTGTGTCTAGTTCTTGCATGACATAGATTCCTTGAGTTTAGCGATGATGCAGATAGCTGCAGTACTGAGTGCATCACTCGTGATGTACATGGTGTCATCTCGCCTCTATGCGTCTGCTGACCTCCGTGGGCCTCATCTGTGATAACAAATTGCTCTTTCTTTAGTCCCCAATTGCTTTCTGCGGCCTAGGGAAGCTCAGAAAGCTGCAGATGAAGCAAAAGCTCGGTTTGCGCACATTGATGGAGATCACCTGACGCTGTTAAATGTGTACCACGCTTATAAGCAGAATAATGAGGATCCAACATGGTGTTACGAGAATTTTATCAATACAAGAGCCCTCAAATCTGCAGACAATGTGAGACAGCAACTAGTACGCATAATGAACAGATACAACCTGAAGTTGTGCAGCACTGACTTCAATAGTCGTGATTATTATGTGAATATACGGAAGGCAATGCTAGCAGGGATTTCATGCATGCAGCACACATGGAGCGTACAGGCCACTATCTAACAGTTAAAGACAATCAGATAGTCCATTTACATCCATCTAATTGTCTTGACCACAAGCCAGAATGGGTCATATACAACGAATATGTATTGACAAGCAGGAACTTCATTCGCACTGTCACAGATGTTCGTGGAGAGTGGCTGATTGATATTGCACCACATTATTATGATTTGAGCAATTTTCCGCAGTGTGAGGCAAGGCGTGTTTTGGAGAGAATCTACATTAAGCGTGAGAGGGAGAG

Ace file of the UniGene sp_v1.1_unigene28731

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent RNA helicase, putative; K12820 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:3.6.4.13]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	protein	-	-	92%

Source	ECs	Term	Type	e value	Identity
AutoFact	RNA helicase.	EC:3.6.4.13	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	helicase activity	GO:0004386	Molecular Function	92%
Blast2go	nucleolus	GO:0005730	Cellular Component	92%
Blast2go	precatalytic spliceosome	GO:0071011	Cellular Component	92%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	92%
Blast2go	catalytic step 2 spliceosome	GO:0071013	Cellular Component	92%
Blast2go	membrane	GO:0016020	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF1605	IPR011709	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADJ5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 211 aas, putative chimeric sequence, your sequence is longer than subject: 474 - 348

Fln protein: MILVGETGSGKTTQIPQFVVEAGYTSNRKQIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKTVLKYLTDGMLLREAMTDPLLERYRVIILDEAHERTLATDVLFGLLKEVLRNRQDLKLVVMSATLEAEKFQAYFNVAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHTCETPGDILVFLTGEEEIEDACKKITKEIQNLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLREGGPPGRKVVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQAQTYPEILRSNLANVVLNLKKLGIDDLVHFDFMDPPAPETLMRALETLNYLGALDDEGNLTKLGELMSEFPLDPQMSKMLVVSPEFNCSNEILSITAMLSGMFLYSSAQYVITELLSGFCVYSMLSSCLSPVMHF*

Protein Length: 475

Fln nts: TGGAGAAGAATCAGACC_-_ATGATTTTGGTCGGAGAAACTGGAAGTGGCAAGACCACACAGATTCCTCAGTTTGTGGTTGAGGCGGGATACACTTCAAATCGCAAACAGATTGCCTGTACTCAGCCTCGTAGAGTGGCAGCAATGTCTGTATCTCGACGAGTGGCTGAGGAAATGGATGTGACAATTGGGGAAGAAGTTGGTTACAGTATTCGATTTGAAGATTGCAGCAGCTCAAAGACTGTTCTTAAGTATTTGACAGATGGTATGCTTCTTAGGGAAGCAATGACTGACCCATTATTAGAGCGGTATAGGGTGATCATTCTTGATGAGGCACATGAGAGAACCTTGGCTACTGATGTTCTTTTTGGCCTTCTAAAGGAAGTTTTAAGAAATCGACAAGATTTGAAGCTTGTTGTTATGAGTGCTACTTTGGAAGCTGAAAAGTTCCAAGCTTATTTCAATGTTGCTCCTCTCATGAAAGTACCTGGCAGATTACATCCAGTTGAGATATTCTACACTCAGGAACCAGAGAGGGATTATCTTGAAGCGGCAATTAGGACAGTTGTACAGATACATACGTGTGAGACACCTGGGGACATACTTGTTTTTCTTACTGGAGAAGAGGAAATAGAAGATGCATGTAAGAAAATTACAAAAGAGATTCAGAACCTGGGTGATCAGGTTGGGCCTGTGAAAGCTGTTCCACTCTATTCAACCCTACCCCCAGCAATGCAGCAAAAGATTTTTGAACCAGCTCCACCACCATTGAGGGAAGGTGGTCCTCCTGGAAGAAAAGTTGTGGTGTCAACTAACATTGCAGAAACTTCCTTGACAATTGATGGGATAGTTTATGTGATTGATCCTGGTTTTGCAAAGCAAAAAGTTTACAACCCTAGAATACGTGTGGAGTCTTTACTAGTTTCACCGATATCAAAGGCAAGTGCTCATCAAAGATCAGGGCGTGCGGGTAGAACACAGCCAGGAAAATGCTTCAGACTTTATACAGAAAAGAGTTTCCATAATGATCTTCAAGCACAGACATACCCTGAGATTTTACGTTCCAATCTAGCAAATGTGGTTCTTAATCTGAAGAAGTTGGGGATTGACGACTTAGTACACTTTGACTTTATGGACCCACCTGCTCCAGAAACTCTGATGCGAGCATTGGAGACTTTGAATTATTTGGGTGCTTTAGATGATGAGGGAAATCTAACCAAGTTGGGAGAATTAATGAGTGAGTTTCCTTTGGATCCTCAAATGTCAAAAATGTTAGTTGTCAGCCCAGAATTCAACTGCTCCAATGAAATTCTTTCCATCACTGCAATGCTATCAGGTATGTTTTTATATTCCAGTGCACAATATGTAATTACTGAGTTATTGTCTGGCTTTTGCGTGTATTCTATGCTGTCTAGTTGTCTCTCCCCAGTCATGCATTTCTAG___GGTAGCAATAAATAGGCACTCAGTACTAGTTGTTCTGCATTTGCATCAAAGCATCATCCATGCTTGTGTCTAGTTCTTGCATGACATAGATTCCTTGAGTTTAGCGATGATGCAGATAGCTGCAGTACTGAGTGCATCACTCGTGATGTACATGGTGTCATCTCGCCTCTATGCGTCTGCTGACCTCCGTGGGCCTCATCTGTGATAACAAATTGCTCTTTCTTTAGTCCCCAATTGCTTTCTGCGGCCTAGGGAAGCTCAGAAAGCTGCAGATGAAGCAAAAGCTCGGTTTGCGCACATTGATGGAGATCACCTGACGCTGTTAAATGTGTACCACGCTTATAAGCAGAATAATGAGGATCCAACATGGTGTTACGAGAATTTTATCAATACAAGAGCCCTCAAATCTGCAGACAATGTGAGACAGCAACTAGTACGCATAATGAACAGATACAACCTGAAGTTGTGCAGCACTGACTTCAATAGTCGTGATTATTATGTGAATATACGGAAGGCAATGCTAGCAGGGATTTCATGCATGCAGCACACATGGAGCGTACAGGCCACTATCTAACAGTTAAAGACAATCAGATAGTCCATTTACATCCATCTAATTGTCTTGACCACAAGCCAGAATGGGTCATATACAACGAATATGTATTGACAAGCAGGAACTTCATTCGCACTGTCACAGATGTTCGTGGAGAGTGGCTGATTGATATTGCACCACATTATTATGATTTGAGCAATTTTCCGCAGTGTGAGGCAAGGCGTGTTTTGGAGAGAATCTACATTAAGCGTGAGAGGGAGAG

Fln Alignment:

sp_v1.1_unigene28731___PEILRSXXXXXXXXXXXXGIDDLVHFDFMDPPAPETLMRALETLNYLGALDDEGNLTKLGELMSEFPLDPQMSKMLVVSPEFNCSNEILSITAMLS
D5ADJ5_______________PEIQRTNLGNVVLLLKSLNIENLLDFDFMDPPPQDNILNSMYQLWVLGALDNVGRLTALGRKMVEFPLDPPLAKMLLIGEQLGCVNEVLTIVSMLS

SNPs (tot: 5)

Position	A %	G %	T %	Probability
1588		14	85	0.993533
1810		80	20	0.995493
1811	20	80		0.995493
1812		20	80	0.995493
1867	66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain