SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28721

Length: 837 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28721

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin reductase n=1 Tax=Ginkgo biloba RepID=Q5XLY0_GINBI	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	nadph-dependent reductase	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	63%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P186

Fln msg: Overlapping hits, possible frame ERROR between 82 and 51, STOP codon was not found. Distance to subject end: 72 aas, your sequence is longer than subject: 279 - 227

Fln protein: GSWLLKNLLRRGYFVNxxxxxxxxxxxxTGPLLSLPGAAERLKLFQADLCEEGSFDSAVEGCEGVFHVASPMDFSKSSEDDFVEPALKGVLNLLKSCSRAKSVRRVVYTSSTAAACPLDEEGHLIGGYTLDESTWTPVDFLRTKLHPMNFYCLAKTLAEKAAIEYGLNTSEMEVVTIGPGYVGGPCMVSEFPFSCEQILGLITGNYEGLKMAMSFLGSIPLVHIDDVCEAHIFLMEQPNVEGRHICCERSLTLSQMAEFIHKRYPQFTLKFKTHGEDDN

Protein Length: 280

Fln nts: TGGATCATGGCTCCTCAAGAATCTTCTCCGTAGAGGCTACTTTGTCAACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTGGGCCTCTGCTGTCCCTGCCTGGTGCTGCAGAGAGACTGAAACTCTTCCAAGCAGATCTATGCGAAGAGGGCTCTTTTGATTCAGCCGTGGAGGGCTGTGAAGGGGTCTTCCATGTGGCCAGTCCTATGGACTTCTCCAAGTCTTCTGAGGATGATTTCGTTGAGCCTGCTTTGAAAGGGGTATTGAATTTGTTGAAGTCTTGCTCACGTGCTAAATCTGTGAGGCGCGTGGTTTATACTTCTTCAACGGCAGCAGCCTGTCCCTTGGATGAGGAAGGCCACCTTATTGGTGGCTACACTCTCGACGAGTCAACATGGACCCCTGTCGATTTCCTCAGAACCAAACTCCATCCTATGAATTTTTATTGTTTGGCCAAGACTTTGGCGGAGAAAGCAGCTATTGAATATGGATTAAACACTAGTGAAATGGAGGTTGTGACAATTGGACCGGGTTATGTGGGTGGACCATGTATGGTCTCTGAATTCCCATTTTCATGTGAGCAAATATTAGGCTTAATTACAGGTAATTATGAAGGGCTCAAGATGGCCATGTCTTTTTTGGGATCAATACCATTAGTTCATATTGATGATGTATGTGAGGCTCATATATTTTTGATGGAGCAACCAAATGTAGAAGGACGACATATTTGTTGTGAGCGCTCTCTTACACTTTCTCAAATGGCAGAGTTCATTCACAAGCGCTATCCACAATTCACTTTAAAATTCAAAACCCATGGTGAAGATGATAATG

Fln Alignment:

sp_v1.1_unigene28721___GSWLLKNLLRRGYFVNxxxxxxxxxxxTGPLLSLPGAAERLKLFQADLCEEGSFDSAVEGCEGVFHVASPMDFSKSSEDDFVEPALKGVLNLLKSCSRAKSVRRVVYTSSTAAACPLDEEGHLIGGYTLDESTWTPVDFLR-TKLHPMNFYCLAKTLAEKAAIEYGLNTSEMEVVTIGPGYVGGPCMVSEFPFSCEQILGLIT
A9P186_______________GSWLVKNLLQRGYAVNxxxxxxxxxxxAGPLLSLPGAAERLKLFQADLCEEKAFDSAVEGCEGVFHVASPMDFSKLSEDDFVEPAVKGVMNVLNACSRAKSVRRVVYTSSVAAACPVNEEGKLISGCSLDESRWTPVDFLRKTHQNPLGFYSVAKTLAEQAAIEYGSN-SEMDVVTIAPSGVAGPCLTCTFPTSCQMISGIIT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
113		20		80	0.995493
246	20		80		0.995493
382	66	33			0.997452
560			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain