SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28712

Length: 1581 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28712

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to ADP-ribosylation factor	-	-	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	adp-ribosylation factor	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	99%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	99%
Blast2go	protein ADP-ribosylation	GO:0006471	Biological Process	99%
Blast2go	intracellular	GO:0005622	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTP-binding protein domain	IPR005225	-	99%
Blast2go	ADP-ribosylation factor	IPR006688	-	99%
Blast2go	Small GTPase superfamily, ARF/SAR type	IPR006689	-	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPC8

Fln msg:

Fln protein: MGLTFTKLFQRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*

Protein Length: 183

Fln nts: TTCCCCCTGACCAGCAGCGTCTTATCTTCCCATCCTCCGGCGTCGTGAATGGAATATATTCAAATATAACCATAAATATCCCTGGAGTGAGTCCAACTTACCTTCCTCCAGCCGCATCCGTAACTGTCAACCGGAGATGCTCTGGTGATTAATCACGTTGCACTGAACGGGTGTAAACAAAGAGCTCCAAAGGAAAGAGAGTGATCTCTCCCTCTTTTCTGGGGAGGCATCGGGATTTTTCTGCGCAGTCCCTCAACAGGTCTTCTTGCATTTTCAATTTGCATTCGGAAGTTGCTCAACTCGAAGCTGAAAAA_-_ATGGGGCTCACTTTCACCAAGCTTTTCCAGCGGCTTTTTGCAAAGAAGGAGATGCGCATTCTTATGGTCGGTCTCGATGCAGCCGGAAAGACGACCATTTTGTATAAGCTCAAACTGGGAGAGATTGTTACTACTATCCCAACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATCAGCTTCACTGTTTGGGATGTTGGAGGTCAGGACAAGATCCGACCACTTTGGAGACATTACTTCCAGAATACTCAGGGTCTAATATTTGTGGTTGACAGCAATGATAGAGACCGTGTAGTTGAGGCTAGAGATGAATTGCACCGGATGCTGAATGAGGATGAACTACGTGATGCTGTCTTACTTGTATTTGCAAACAAGCAAGATCTTCCAAATGCTATGAATGCAGCAGAGATCACTGATAAGCTTGGTCTGCATTCTCTGCGTCAGCGTCATTGGTATATCCAGAGCACTTGTGCAACTTCTGGTGAAGGCCTTTATGAAGGCTTGGATTGGCTTTCAAACAACATTGCCAACAAGGCATAA___ACTGGAATGCATCCAATTTCTTTATTGGGCATGAACTATATTAGCCATGAGGTAGATTCCTTCAGATTACAATGATTGAGCCACTGGCATGGATTTGCTAAAGAAGACCTTGACTCGATTCATTTTCTTGATAGCCTGATTGCTATGCATTTACCAACAACTTTGTCATTATTGTTCAAGAACCTGGGATTTTTCTTTCTGACAGTTGTGCTATATTGACTATTATAGCTCATATATATATATATATAGCTGTTATCTGTTGACTGAGAAGACTTGTATAATTAGATTTTAGAGGACTGAAAGGCTTTGCTATGTTAACTAGGAACAAATATAATGTTGCTTTCCAAATTTATTAGTTGGGAAAAACAGAAAGTAGTTCAGTATTTACATCAATATCTGAAAACTGTATCAGATATTTATATCTATAGTCTTATCCTGTTGACCAGTTGAGGTTTCCTGATTGTGAAGTTTATAGTGATAATGCTGTATGCTGCATCACTGTGAAAGCTATAGCAGTCTGTACACCTGTGTTATGTTAGTTATTAGTAGTCTTTTTGTTTTGGGATAAACAGAATGATGTACGGGAGTTAATAGTCTAGGTTGAGTTGACCTCTTTCTTCCTTTTTGAAGAGATCCGTGAACTTGCTTTTAAAAAAATGCTGGCCGTGTTTGATTTGAAACTATCAAAATTACTTCGAAGTATGATTATTATAAATAAGTT

Fln Alignment:

sp_v1.1_unigene28712___MGLTFTKLFQRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
B8LPC8_______________MGLTFTKLFQRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
567	96		3		0.991164
866	95		4		1.0
1093		2		34	1.0
1111			91	8	0.999766
1143	87		12		0.992554
1279		15		85	1.0
1464		12		87	0.992554
1480		85		14	0.993533
1517		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1092	1108	AT AT AT AT AT AT AT AT A	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain