SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28706

Length: 1548 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28706

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NYV8_PICSI	-	-	96%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	proteasome subunit beta type 7-a precursor	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	0.0	92%
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase T1A, proteasome beta-subunit	IPR000243	-	92%
Blast2go	Proteasome, subunit alpha/beta	IPR001353	-	92%
Blast2go	Proteasome, beta-type subunit, conserved site	IPR016050	-	92%
Blast2go	Proteasome B-type subunit	IPR023333	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYV8

Fln msg:

Fln protein: MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYKEGMTREEGIKLVCEAICSGIFNDLGSGSNVDVCVITKGQREYLRNYALPNPRTYVSSKGYSFAKGHTEVLSTKIIPLKEHVQIIEGDAMEE*

Protein Length: 275

Fln nts: TAGTTAAAGGTTTGCTCTCTGAACAATTTTCAGCTCGCCACCGAGAAAAGCCGAAAACACAAATACCAAGTGACGGACTCCTCTTCCCTTTGCCGCGATTTAGGGTTTGGAAGGTCTCAAACTTCGACGGAATTTCACTGATTTCGGGAGTTTGCGGGGTATTATTCTGCGTTTTACAGGGTTTCTGTTCCCATCCGCGAAGCC_-_ATGGCAAATACTACGATCGAACTCCCCCCTAAAGGCGGCTTCAGCTTTGATTTGTGTCGGAGAAATGAAATGCTTGCGAAGAAAGGTGTTCAGCCTCCTTCGTTCCGCAAGACAGGAACAACCATTGTAGGCCTCGTTTTCAAGGATGGAGTCATTCTTGGAGCAGACACTCGTGCAACAGAAGGTCCAATTGTATGTGATAAGAACTGTGAAAAAATACATTATATGGCACCAAACATATACTGCTGTGGAGCTGGAACTGCTGCTGATACAGAAGCAGTGACAGATATGGTTAGCTCCCAACTAGAATTGCACCGCTATGCAACTGGTCGAGAATCGAGGGTTGTCACTGCTCTTACCCTTCTCAAATCTCATCTTTACAGTTACCAAGGCCATGTGAGTGCAGCCCTGGTACTTGGTGGTGTGGATTGTACAGGACCACATTTGCATACAATTTATCCCCATGGATCAACTGACACTTTACCTTTTGCTACAATGGGTTCCGGTTCTCTTGCTGCTATGGCTATGTTTGAATCAAGATACAAAGAAGGCATGACAAGAGAGGAGGGAATAAAGCTGGTTTGTGAAGCTATCTGTTCTGGAATCTTCAATGATCTGGGAAGTGGAAGTAATGTTGACGTATGTGTGATAACAAAGGGTCAAAGAGAATATTTGCGGAATTATGCGCTTCCAAATCCACGTACCTATGTTAGTTCAAAAGGTTATTCATTTGCCAAGGGACATACAGAGGTTCTTTCAACGAAAATAATCCCTTTGAAAGAGCATGTGCAAATTATTGAAGGGGATGCTATGGAAGAGTGA___GTAATGCAGAGTAAGAAACTGAAAGCATGCCTAATGAAAGGAGGCTTCCTGCATCTTTCCCGAGGAAAAAGTATTGTTTATGGATTTGTTTTTATTGTTGATGTGATGGGACAGTTATGCAGTCTTCAGTTTAACATTACTTCACTCATTGCTATTCTGAAACCATCTTATTTTGCAGTGATAAATTCTGGTATTTCTTGGGATAGTTATTTCTCCTATAAATGAATCCTTCACAGTCACTGAACATAATTTGGAAACCATTCCATTCAATTAACGAATCGGGACTCGATCCCTGAGATGGATTTTGCGAAAGGAACATCACACAGATATCCAACATATTCTAAATAGATCTTCACTATCTGCAAAAATTTGTATCATAACATAAAATAATCTATGAGCTATATGATGTGATGAGAGAAGGATGGATTAATTTGAGAGAGAGAATAATTCAGGTGTTGGTGTTGCTATATAACATGGAGTTTTATATATAAAGCTAAACTGCTGTTTCATAGTTTACACGAG

Fln Alignment:

sp_v1.1_unigene28706___MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYKEGMTREEGIKLVCEAICSGIFNDLGSGSNVDVCVITKGQREYLRNYALPNPRTYVSSKGYSFAKGHTEVLSTKIIPLKEHVQIIEGDAMEE
A9NYV8_______________MANTAIELPPKGGFSFDLCRRNEMLAKKGVQSPSFRKTGTTIVGLVFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYREGMTREEGIKLVCQAICSGIFNDLGSGSNVDVCVITKGQKEYLRNYELPNPRTYVSSKGYSFAKGHTEVLSTKITPLKEHVKIIEGDAMEE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
945	72		27		1.0
1040	97		2		0.975753
1056		97		2	0.97849
1151		7		92	1.0
1186	94			1	0.95615
1266		97		2	0.977151
1287		3		96	0.989722
1313		95		4	0.994598
1355	80		20		0.995493
1472	14			85	0.993533
1475	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain