SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28705

Length: 962 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28705 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative	-	-	66%
FL-Next	sp=Protease Do-like 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	47%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	photoinhibition	GO:0010205	Biological Process	71%
Blast2go	peptidase activity	GO:0008233	Molecular Function	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PDZ domain	IPR001478	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RY22

Fln msg: Distance to subject end: 455 aas, your sequence is shorter than subject: 320 - 1097

Fln protein: TLVYKGFDEARRLGFQAETEQFVRQTFPAEKGILVIDSVVPGGSAHKMRLRPGDILVSVNGELVTQFFKLETVLDDNVGKNIDLEVERGGDPVKVTLQVQDLHSVTPDYFLEVSGGVIHPLSYQQARNFRFNCGLVYVAEPGYMLSRAGVPRHAIIKKLDGKEITGIEAFICILSNLSRGKRVPLEFVSHKDRHRSKFVLVTINRHEWYAQPTVYTRDDVAGLWKKRSAISTITSLFSSLSIFHDQKGTAIQPQVSSCGQFSDLESDSSKVLENIPSLSGTALDELRNISVAERIIEPSLVIVNVDIPLIWIDGVNAELF

Protein Length: 321

Fln nts: TGACCCTAGTTTACAAAGGATTCGATGAGGCACGTCGGTTAGGGTTTCAAGCTGAGACTGAACAATTTGTGAGACAGACTTTTCCTGCTGAGAAGGGAATTCTTGTTATAGACTCCGTGGTGCCTGGAGGTTCTGCTCACAAGATGCGCTTAAGGCCCGGAGATATACTTGTCAGTGTCAATGGTGAGCTTGTAACGCAATTCTTTAAGTTAGAGACAGTGCTGGATGATAATGTTGGAAAGAATATCGATTTAGAGGTTGAGAGGGGTGGTGATCCTGTGAAAGTCACTTTGCAAGTCCAGGACTTGCATTCTGTAACTCCAGATTACTTCTTGGAAGTCAGTGGTGGCGTTATTCATCCTCTATCGTACCAACAGGCTAGAAATTTCCGGTTTAATTGTGGTCTAGTATATGTTGCGGAACCAGGGTATATGTTGTCAAGGGCAGGTGTTCCGCGGCATGCCATCATTAAAAAATTGGACGGGAAGGAAATTACAGGAATAGAAGCATTTATATGTATTTTGTCAAATTTGTCCAGAGGGAAACGGGTTCCGCTAGAATTTGTGAGCCATAAAGATCGTCATCGAAGTAAGTTCGTTCTTGTTACTATTAATAGGCATGAATGGTATGCACAGCCCACAGTCTACACTCGAGATGATGTGGCTGGACTCTGGAAAAAAAGATCTGCAATCTCGACAATTACATCTTTATTTTCATCTCTTTCAATTTTTCATGATCAGAAAGGTACAGCAATCCAACCACAGGTATCATCATGTGGACAATTTAGTGATCTGGAAAGTGATTCATCAAAAGTTTTGGAAAATATCCCATCCTTATCTGGGACTGCCTTAGATGAGCTTAGGAATATTTCAGTTGCGGAGCGAATTATAGAGCCGAGCCTTGTCATAGTTAATGTCGATATACCTTTGATTTGGATTGATGGTGTGAATGCTGAGCTATTT

Fln Alignment:

sp_v1.1_unigene28705___TLVYKGFDEARRLGFQAETEQFVRQTFPA-EKGILVIDSVVPGGSAHKMRLRPGDILVSVNGELVTQFFKLETVLDDNVGKNIDLEVERGGDPVKVTLQVQDLHSVTPDYFLEVSGGVIHPLSYQQARNFRFNCGLVYVAEPGYMLSRAGVPRHAIIKKLDGKEITGIEAFICILSNLSRGKRVPLEFVSHKDRHRSKFVLVTINRHEWYAQPTVYTRDDVAGLWKKRSA-----------XXXXXXXXXXXXXFHDQKG------------TAIQPQVSSCGQFSDLESDSSKVLENIPSLSGTALD------ELR-----------------------NISVAERIIEPSLVIVNVDI-PLIWIDGVNAELF
Q8RY22_______________TFLHKGFDEIRRLGLRSETEQVVRHASPTGETGMLVVDSVVPSGPADK-HLEPGDVLVRVNGTVLTQFLNLENLLDDGVGQILELEIERGGQPLSVSVSVQDLHSITPDHFLEVSGAVIHPLSYQQARNFRFPCGLAYVADPGYMLFRAGVPRHAIIKKVANEDISSLGDLVSVLSKLSRGARVPLEYMSHTDRHRKKSVLVTIDHHEWYAPPQLYTRNDSSGLWDAKPAIEPASVSPSIGNNGFPISQDISLCHHDTEPMHEVNVRGVTDIAAIMETSSGDGSQNDFGSEAKKQRVDEDSSDGIAANGSLYGSEFKSDDAMETDTTVLRDFEGATALSANASLAERAIEPALVMFEVHVPPSCSLDGVHSQHF

SNPs (tot: 3)

Position	A %	C %	T %	Probability
747		25	75	0.996473
754	25	25		0.995533
760	75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain