SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28695

Length: 2015 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28695
GTCCAGACCTGAGACCCATTGGAGAACCCATTAGAAAATCCGGCAGGGGACGAGGCATCACGGTGCATTTTGCTGCATTTGAGCTCGACGGAAATCGATATGAATTGGAGGACCCTGTGTTGGTAACCCCGGAAGAGAAAAATGAGAAGCCATATGTTGCTATAATCAAGGATATAAAGCAGGCAAAAGATGGCTCTCTTGCTGTTGTAGGCCAATGGTTTTACCGGCCCGAGGAAGCTGAAAGGAAAGGAGGAGGAAGCTGGCAAGCACGTGATGCACGTGAACTATTTTATAGTTTCCATCATGATGAAGTGCCTGCAGAATCTGTTATGCACAAATGTGTTGTGCACTTTATTCCACTAAACAAGCAACTTCCTCCCCGCACAAAGCATCCAGGTTTTATTGTGCAAAAGGTTTATGACACAGTTGCGAGAAAACTTTGGAAATTGACTGACAAAGATTATGAAGATTCGAAGCAGAAAGAAATTGATTTGCTAGTGCAAAAAACTCGCAAGGCTTTGGGAGAACTCCCTGATGTTGAGTCAGATGAATTTGTCCCTGATCTAGAGGAGTCTGAAATGAACAAAAGACAGGTTCGAAGGAAGACTGTGACACCTATAAACACATTTAGAGATGAAGATGCAACAGGGAGATCAGAACCGTTTGGAAAAGCAGAAACACCAGGAAGCTCTATGAATGATGGACAGTGGGGAAATACTTCTGAGATTTATACCATTCTGTTGAATCAAAATGTACTAACTGGAGTGAAGTCACGTGATAGATGGTTGGAGAAAATCATGGAAGGGGTGAAGCATATATGCAGTTTAAATAGACAGATAGATTCTCTAGACAAAATGCAAGAAGACACTGAAGTGAAAGCTGTTGATGCAGATGGAGAATCCGAAGAGAAGGTTCATAAGACTGCAGAAAGCTCGGAGGGTCACCAAGAGAAAATAACTGAGGACAGTAAGGTGGACAATAATATTTTGTGGCCTGAGGCAGCTGTTGCAGCAATAACTGCACTTGAGAAGGCAGCTTATGAGAGTTTGGGCTCTGACAATCATAAGTACAATATAAAGATGCGGCAACTTGAGTTTAATCTGAAGAGTAATGCAATATTGGCAACACGTCTGCTAAAGAAAGAGCTGGAACCTTTAAGAGTTTTAAACATGTCACCTGCAGAATTAAAGGATGGTTTAACAGCAGAGGAAAAAACTACTCAAGAGCCTCAGGAGTTACAAACGATGCAGATGGCAGATGTCCGATGTTCAATATGCACGGAGAAGAAGGTTGGCGTGAGAGACATCATCCATGTTGGATATGGGGATCGATATCAGCTGGAGTGCCTGAAGTGTGGGAATTCATGGTACGCGTCCAGAGATTCTATCTCTTCCTTAACGATAGAATCTGTAAACCCTGTTAATCCTGTTGGCACAGCACCAGGGGCAACTACAAAGTTTGAAGAAGCTGAAAAGGCAATGGTGAGCCCACGTGAATTAGATAAGATAACAAATGGTGACATTGGACAGAAGGAAATACCAGCAGTGACACCCATTCAAGATCCTCAGACTGCTGGTGATGTTGCACCTGCAGCCCGTGATTCAAACCCTATAGAGAGCTAACTCAATTTTACTGAGGCCACACAACAAACAAATTAGATGATTTGTAGAAAGGATGGTTTGTGAAAATGTAAAGATGGGCAGGCTATTGCTGTATATATTCTTTGTATCGTCTTAGAGTCATGACAGACGGTTATGTCAGCACTGCAGCATCCTGAGTTGTTTTATGTCACAGTTTAGGAAGAAACTTACAAACAAATTAAGGGAGTTTTGCTGCAGGTATTGTAACATGTTATTACTGAAAATCGATTATTAAAACTTTTAATATAAGTATAACAATTAGCTCAGAAGTCGAAATAGATGCACATGGTGTACAGGGAGTGTCTGCATTCAGTTTCTCCTTGTTAATGGTAAGATCAGAGAATTATGATAGGATTTCATGCAGGTTGCTGAACC

Ace file of the UniGene sp_v1.1_unigene28695

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	bromo-adjacent homology (BAH) domain-containing protein	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	protein	-	-	65%

Source	InterPros	Term	Type	Identity
Blast2go	Bromo adjacent homology (BAH) domain	IPR001025	-	65%
Blast2go	Transcription elongation factor S-II, central domain	IPR003618	-	65%
Blast2go	Transcription elongation factor S-IIM	IPR017890	-	65%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1G4

Fln msg: W2: There is no M at the beginning, your sequence is longer than subject: 540 - 152

Fln protein: PDLRPIGEPIRKSGRGRGITVHFAAFELDGNRYELEDPVLVTPEEKNEKPYVAIIKDIKQAKDGSLAVVGQWFYRPEEAERKGGGSWQARDARELFYSFHHDEVPAESVMHKCVVHFIPLNKQLPPRTKHPGFIVQKVYDTVARKLWKLTDKDYEDSKQKEIDLLVQKTRKALGELPDVESDEFVPDLEESEMNKRQVRRKTVTPINTFRDEDATGRSEPFGKAETPGSSMNDGQWGNTSEIYTILLNQNVLTGVKSRDRWLEKIMEGVKHICSLNRQIDSLDKMQEDTEVKAVDADGESEEKVHKTAESSEGHQEKITEDSKVDNNILWPEAAVAAITALEKAAYESLGSDNHKYNIKMRQLEFNLKSNAILATRLLKKELEPLRVLNMSPAELKDGLTAEEKTTQEPQELQTMQMADVRCSICTEKKVGVRDIIHVGYGDRYQLECLKCGNSWYASRDSISSLTIESVNPVNPVGTAPGATTKFEEAEKAMVSPRELDKITNGDIGQKEIPAVTPIQDPQTAGDVAPAARDSNPIES*

Protein Length: 541

Fln nts: GTCCAGACCTGAGACCCATTGGAGAACCCATTAGAAAATCCGGCAGGGGACGAGGCATCACGGTGCATTTTGCTGCATTTGAGCTCGACGGAAATCGATATGAATTGGAGGACCCTGTGTTGGTAACCCCGGAAGAGAAAAATGAGAAGCCATATGTTGCTATAATCAAGGATATAAAGCAGGCAAAAGATGGCTCTCTTGCTGTTGTAGGCCAATGGTTTTACCGGCCCGAGGAAGCTGAAAGGAAAGGAGGAGGAAGCTGGCAAGCACGTGATGCACGTGAACTATTTTATAGTTTCCATCATGATGAAGTGCCTGCAGAATCTGTTATGCACAAATGTGTTGTGCACTTTATTCCACTAAACAAGCAACTTCCTCCCCGCACAAAGCATCCAGGTTTTATTGTGCAAAAGGTTTATGACACAGTTGCGAGAAAACTTTGGAAATTGACTGACAAAGATTATGAAGATTCGAAGCAGAAAGAAATTGATTTGCTAGTGCAAAAAACTCGCAAGGCTTTGGGAGAACTCCCTGATGTTGAGTCAGATGAATTTGTCCCTGATCTAGAGGAGTCTGAAATGAACAAAAGACAGGTTCGAAGGAAGACTGTGACACCTATAAACACATTTAGAGATGAAGATGCAACAGGGAGATCAGAACCGTTTGGAAAAGCAGAAACACCAGGAAGCTCTATGAATGATGGACAGTGGGGAAATACTTCTGAGATTTATACCATTCTGTTGAATCAAAATGTACTAACTGGAGTGAAGTCACGTGATAGATGGTTGGAGAAAATCATGGAAGGGGTGAAGCATATATGCAGTTTAAATAGACAGATAGATTCTCTAGACAAAATGCAAGAAGACACTGAAGTGAAAGCTGTTGATGCAGATGGAGAATCCGAAGAGAAGGTTCATAAGACTGCAGAAAGCTCGGAGGGTCACCAAGAGAAAATAACTGAGGACAGTAAGGTGGACAATAATATTTTGTGGCCTGAGGCAGCTGTTGCAGCAATAACTGCACTTGAGAAGGCAGCTTATGAGAGTTTGGGCTCTGACAATCATAAGTACAATATAAAGATGCGGCAACTTGAGTTTAATCTGAAGAGTAATGCAATATTGGCAACACGTCTGCTAAAGAAAGAGCTGGAACCTTTAAGAGTTTTAAACATGTCACCTGCAGAATTAAAGGATGGTTTAACAGCAGAGGAAAAAACTACTCAAGAGCCTCAGGAGTTACAAACGATGCAGATGGCAGATGTCCGATGTTCAATATGCACGGAGAAGAAGGTTGGCGTGAGAGACATCATCCATGTTGGATATGGGGATCGATATCAGCTGGAGTGCCTGAAGTGTGGGAATTCATGGTACGCGTCCAGAGATTCTATCTCTTCCTTAACGATAGAATCTGTAAACCCTGTTAATCCTGTTGGCACAGCACCAGGGGCAACTACAAAGTTTGAAGAAGCTGAAAAGGCAATGGTGAGCCCACGTGAATTAGATAAGATAACAAATGGTGACATTGGACAGAAGGAAATACCAGCAGTGACACCCATTCAAGATCCTCAGACTGCTGGTGATGTTGCACCTGCAGCCCGTGATTCAAACCCTATAGAGAGCTAA___CTCAATTTTACTGAGGCCACACAACAAACAAATTAGATGATTTGTAGAAAGGATGGTTTGTGAAAATGTAAAGATGGGCAGGCTATTGCTGTATATATTCTTTGTATCGTCTTAGAGTCATGACAGACGGTTATGTCAGCACTGCAGCATCCTGAGTTGTTTTATGTCACAGTTTAGGAAGAAACTTACAAACAAATTAAGGGAGTTTTGCTGCAGGTATTGTAACATGTTATTACTGAAAATCGATTATTAAAACTTTTAATATAAGTATAACAATTAGCTCAGAAGTCGAAATAGATGCACATGGTGTACAGGGAGTGTCTGCATTCAGTTTCTCCTTGTTAATGGTAAGATCAGAGAATTATGATAGGATTTCATGCAGGTTGCTGAACC

Fln Alignment:

sp_v1.1_unigene28695___NEKPYVAIIKDIKQAKDGSLAVVGQWFYRPEEAERKGGGSWQARDARELFYSFHHDEVPAESVMHKCVVHFIPLNKQLPPRTKHPGFIVQKVYDTVARKLWKLTDKDY
A9P1G4_______________NAPPFIGIIRHQVVDEEGDVKLGVNWLYRPADVKLGKGASIEALPPNEVFYSFHQDEISGASLLHPCKIAFLSKGVQLPSGVS--AFVCRRVYDVTSKCLWWLTDRDY

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
291	88			11	0.923564
292	11			88	0.923564
631	90		10		0.90298
633		10		90	0.90298
634			10	90	0.90298
635	90			10	0.90298
638		10	90		0.90298
639	90	10			0.90298
642	90			10	0.90298
643	90		10		0.90298
645	90	10			0.90298
650	90			10	0.90298
690			87	12	0.992554
862	10		90		0.90298
1196			90	10	0.90298
1197	90		10		0.90298
1198			10	90	0.90298
1238	12		87		0.992554
1464	12			87	0.999964
1465		12	6	81	0.999943
1466			87	12	0.999964
1467	81	12	6		0.999943
1469			87	12	0.999964
1471	87			12	0.999964
1746	28	71			1.0
1846	90	10			0.90298
1847			10	90	0.90298
1852	90	10			0.90298
1854	90			10	0.90298
1857		10		90	0.90298
1859	90		10		0.90298
1861		10		90	0.90298
1865	10		90		0.90298
1880	25		75		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain