SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28664

Length: 2255 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28664
GCGAAGTTAAAATCTCGGGCCTCCACCTTCTGCGACTTTGGGTAAAACGGACTCTCGTCGAATTAAGGTCCCCGAAAAGCTCCAGGTTGCCTTAAATTTACGGCGTCGGCCTCCAAATCGGCAATTTTTTTCCGATTTCTCTTGCTGGAACCGGCGGAGAATCCAGCATTTTTTCGCAAAAATCTTAAAAGAATCGTCAATTTCTATTCAAAGCTGTGCAAAATGTTCTTATCTGTCAGTCGAGGCCAAATCTTACGGGAAAAGGCGGATTCGGGCTTTCTTGCAGTTTTTTCGGGCATTTTGGTGTCTTTTGCTGGCAAAAGTATCCAAGATTGAGCTGGTCGGCTTATTTAGTTGAAGAAACGAAGGAAAACTCGCAGCGGAGCATACTCTTCTTGGATATTTGGATATTTGCACCGGTTCAAGATGCCTGGGGCATCAGGTGCCTTTAGAGGAGAAAATGGAGTTGATGAATTTCGGCGGGATCCGTATGAGGTGCTGGGTGTCTCTCGTGACGCATCTGATCAGGAGATCAAGTCATCTTATCGTAAGAAGGCTTTAAAGTTTCATCCAGATAAGAATGCCAACAACCCTGAAGCAGCTGAACAGTTCAAGGAAATAACTTATTCTTATGGTATTCTGTCGGATCCAGTAAAGCGCCGTCAATATGATGCAGCCGGTTTTCAGGCAATTGAAAACGAGAATCAAGAATTGGAATTGGATCTGTCTAGCCTGGGAGCAGTGAATACCATGTTTGCTGCTCTTTTCAGCAAGCTTGGAGTTCCAATCAAGACAACAGTATCGGCAACTATTTTGGAAGAGGCTTTAAATGGAGCAGTTCCAATCAGACCACTTCCTTTAGGTCAACCTGTACAGAGAAGGGTTGAGAAACAGTGTGCACATTTCTACTCTGTTACTATAACAGAAAGGGAGGCAGAGGCAGGCCTAGTAGTGCGAGTGGTGTCCTCTGATAAAAGCAAATTCAAGTTGCTGTATTTTGAGCACGAAGAGAATGGAGGGTTAAGCCTTGCTCTACAGGAAGACAGTGCAAAGACGGGGAAAATTACATCAGCTGGGATGTACTTCCTACGCTTCCAAGTTTATCATCTAGACACCACTGCAAATGCAATGGCAATTTCCAAGGATCCAGACGCTGCATTTTTTAAGAAGCTTGATGGTTTTCAGCCATGTGAATTGACTGAGCTAAAGGCTGGCACACATGTCTTTGCTGTTTATGGTGATAACTTCTTTAAAAGTGCTAGTTATACAATAGAAGCTATTTGTGCTGGACCCTTTTCTGAAGCAAAAGAGAAACTCCGTGAGGTGGAGGCCCAAATTTTGACTAAACGTATTGAGCTTTCCAAGTTTGAAGCGGAATATAGGGAGGTTTTAGCTCAGTTTACGGAAATGACTGCTAGATACTCTGAAGAAATGCAAGTTATAGATGGACTTCTCAAGACAAGGGAAGCTATCCATTCCTCGTATACTTCAGTTCCAACACTAAAGAGGACCTTGAGTGGTAGCAAATTCAAGGGGTCAAATAAGGAAGCTAAGGGAGAAGCTGGCATTCACAGCAGAGAATCAAAGCAAGCTAACAGGGACAGGTCTAAAAAGAAATGGTTCAATATCCATCTTAAAGTTGATAAAAGAAAGGCGTGCTGAATAGAGGCAAATCTCTATCCATTGGTGTTATGATGACTTGTTCAAAAGAGGGGGTATCCTTTCTCATCCAGAGGGAGTGGTCAAAACGTCAACCATGCTCTTCTTATATTTCACTCTGTTCAGCAGTAAAATATTCCTCTGTTTGGATGACCTCAGGTAAGTCGACAGGGCATGGATATTCTGAGTATGGTTTTTTTGAAGAAATCTATACTAAGCAGCATATGAAGTTGTTGCTTTTGAGGATTAGTGCCTGTTTGTTTTTGTTCCATTCTTGTGCCGGCTGGCCATTGTATTATGTTCTCTTAATGTAACTCTTCTAAGAGGTATTCAAGGGAGGGCTTGTGTCCCTTCTCCACATTCAATGCAGAGATTAAATCAGTGTGGCTTGTGTCCCTTCTCCACATTCAATGCAGAGATTAAATCAGTGTATCTTATTTTTCGTACTACTGTTGATTTACTGCAAGATTAACCTCGGCAACTTACAATTCATATTATGCTTTGTTTTTTGCTCAATATATGAATTGCAAGTCATCAGAAAAAAGACGAACAAGGACAAAGGTCACATAATAGAAGAACAAGTTATTTTTACTTAC

Ace file of the UniGene sp_v1.1_unigene28664

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Altered response to gravity (Arg1), plant, putative n=1 Tax=Ricinus communis RepID=B9S2J6_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	positive gravitropism	GO:0009958	Biological Process	79%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	79%
Blast2go	phototropism	GO:0009638	Biological Process	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	Golgi stack	GO:0005795	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	0.0	79%
Blast2go	Heat shock protein DnaJ	IPR003095	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN93

Fln msg: your sequence is longer than subject: 412 - 182

Fln protein: MPGASGAFRGENGVDEFRRDPYEVLGVSRDASDQEIKSSYRKKALKFHPDKNANNPEAAEQFKEITYSYGILSDPVKRRQYDAAGFQAIENENQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATILEEALNGAVPIRPLPLGQPVQRRVEKQCAHFYSVTITEREAEAGLVVRVVSSDKSKFKLLYFEHEENGGLSLALQEDSAKTGKITSAGMYFLRFQVYHLDTTANAMAISKDPDAAFFKKLDGFQPCELTELKAGTHVFAVYGDNFFKSASYTIEAICAGPFSEAKEKLREVEAQILTKRIELSKFEAEYREVLAQFTEMTARYSEEMQVIDGLLKTREAIHSSYTSVPTLKRTLSGSKFKGSNKEAKGEAGIHSRESKQANRDRSKKKWFNIHLKVDKRKAC*

Protein Length: 413

Fln nts: GCGAAGTTAAAATCTCGGGCCTCCACCTTCTGCGACTTTGGGTAAAACGGACTCTCGTCGAATTAAGGTCCCCGAAAAGCTCCAGGTTGCCTTAAATTTACGGCGTCGGCCTCCAAATCGGCAATTTTTTTCCGATTTCTCTTGCTGGAACCGGCGGAGAATCCAGCATTTTTTCGCAAAAATCTTAAAAGAATCGTCAATTTCTATTCAAAGCTGTGCAAAATGTTCTTATCTGTCAGTCGAGGCCAAATCTTACGGGAAAAGGCGGATTCGGGCTTTCTTGCAGTTTTTTCGGGCATTTTGGTGTCTTTTGCTGGCAAAAGTATCCAAGATTGAGCTGGTCGGCTTATTTAGTTGAAGAAACGAAGGAAAACTCGCAGCGGAGCATACTCTTCTTGGATATTTGGATATTTGCACCGGTTCAAG_-_ATGCCTGGGGCATCAGGTGCCTTTAGAGGAGAAAATGGAGTTGATGAATTTCGGCGGGATCCGTATGAGGTGCTGGGTGTCTCTCGTGACGCATCTGATCAGGAGATCAAGTCATCTTATCGTAAGAAGGCTTTAAAGTTTCATCCAGATAAGAATGCCAACAACCCTGAAGCAGCTGAACAGTTCAAGGAAATAACTTATTCTTATGGTATTCTGTCGGATCCAGTAAAGCGCCGTCAATATGATGCAGCCGGTTTTCAGGCAATTGAAAACGAGAATCAAGAATTGGAATTGGATCTGTCTAGCCTGGGAGCAGTGAATACCATGTTTGCTGCTCTTTTCAGCAAGCTTGGAGTTCCAATCAAGACAACAGTATCGGCAACTATTTTGGAAGAGGCTTTAAATGGAGCAGTTCCAATCAGACCACTTCCTTTAGGTCAACCTGTACAGAGAAGGGTTGAGAAACAGTGTGCACATTTCTACTCTGTTACTATAACAGAAAGGGAGGCAGAGGCAGGCCTAGTAGTGCGAGTGGTGTCCTCTGATAAAAGCAAATTCAAGTTGCTGTATTTTGAGCACGAAGAGAATGGAGGGTTAAGCCTTGCTCTACAGGAAGACAGTGCAAAGACGGGGAAAATTACATCAGCTGGGATGTACTTCCTACGCTTCCAAGTTTATCATCTAGACACCACTGCAAATGCAATGGCAATTTCCAAGGATCCAGACGCTGCATTTTTTAAGAAGCTTGATGGTTTTCAGCCATGTGAATTGACTGAGCTAAAGGCTGGCACACATGTCTTTGCTGTTTATGGTGATAACTTCTTTAAAAGTGCTAGTTATACAATAGAAGCTATTTGTGCTGGACCCTTTTCTGAAGCAAAAGAGAAACTCCGTGAGGTGGAGGCCCAAATTTTGACTAAACGTATTGAGCTTTCCAAGTTTGAAGCGGAATATAGGGAGGTTTTAGCTCAGTTTACGGAAATGACTGCTAGATACTCTGAAGAAATGCAAGTTATAGATGGACTTCTCAAGACAAGGGAAGCTATCCATTCCTCGTATACTTCAGTTCCAACACTAAAGAGGACCTTGAGTGGTAGCAAATTCAAGGGGTCAAATAAGGAAGCTAAGGGAGAAGCTGGCATTCACAGCAGAGAATCAAAGCAAGCTAACAGGGACAGGTCTAAAAAGAAATGGTTCAATATCCATCTTAAAGTTGATAAAAGAAAGGCGTGCTGA___ATAGAGGCAAATCTCTATCCATTGGTGTTATGATGACTTGTTCAAAAGAGGGGGTATCCTTTCTCATCCAGAGGGAGTGGTCAAAACGTCAACCATGCTCTTCTTATATTTCACTCTGTTCAGCAGTAAAATATTCCTCTGTTTGGATGACCTCAGGTAAGTCGACAGGGCATGGATATTCTGAGTATGGTTTTTTTGAAGAAATCTATACTAAGCAGCATATGAAGTTGTTGCTTTTGAGGATTAGTGCCTGTTTGTTTTTGTTCCATTCTTGTGCCGGCTGGCCATTGTATTATGTTCTCTTAATGTAACTCTTCTAAGAGGTATTCAAGGGAGGGCTTGTGTCCCTTCTCCACATTCAATGCAGAGATTAAATCAGTGTGGCTTGTGTCCCTTCTCCACATTCAATGCAGAGATTAAATCAGTGTATCTTATTTTTCGTACTACTGTTGATTTACTGCAAGATTAACCTCGGCAACTTACAATTCATATTATGCTTTGTTTTTTGCTCAATATATGAATTGCAAGTCATCAGAAAAAAGACGAACAAGGACAAAGGTCACATAATAGAAGAACAAGTTATTTTTACTTAC

Fln Alignment:

sp_v1.1_unigene28664___DPYEVLGVSRDASDQEIKSSYRKKALKFHPDKNANNPEAAE-QFKEITYSYGILSDPVKRRQYDAAGFQAIENE
B8LN93_______________DYYIILNVGRRASEDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQ

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
206	87		12		0.992554
207	12			87	0.992554
208		12		87	0.992554
210	75		12	12	0.975346
211	87			12	0.992554
212	87			12	0.992554
218	12		87		0.992554
220	87			12	0.992554
221	87	12			0.992554
356		13		86	0.999973
358	86			13	0.999973
359	86	13			0.999973
361	86			13	0.999973
362	86		13		0.999973
365		13	86		0.999973
366	86			13	0.999973
367	86			13	0.999973
370	86	13			0.999973
371	86			13	0.999973
372	86		13		0.999973
373	86			13	0.999973
375	13			86	0.999973
377			86	13	0.999973
782		10		90	0.90298
856	14	85			0.993533
864		14		85	0.993533
1402	87			12	0.992554
1485		11		88	0.923564
1557	90		10		0.90298
1595	78		21		1.0
1596		85	14		0.999981
1597	71	14	7	7	0.999974
1852			90	10	0.90298
1905	86	13			0.999973
1906			13	86	0.999973
1908	86	13			0.999973
1916			14	78	0.999974
1917		14		85	0.999981
1921	14			85	0.999981
1922		14		85	0.999981
1924		14		85	0.999981
1925	10		89		0.999919
2070	90			9	0.999872
2194	20			80	0.995493
2195	20	20		20	0.994159
2196	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain