SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28644

Length: 1387 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28644

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] ref\|NP_850833.1\| VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] emb\|CAC01701.1\| TOM (target of myb1)-like protein [Arabidopsis thali	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Blast2go	VHS	IPR002014	-	71%
Blast2go	GAT	IPR004152	-	71%
Blast2go	ENTH/VHS	IPR008942	-	71%
Blast2go	VHS subgroup	IPR018205	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAB9

Fln msg:

Fln protein: MEKFNSFGERIMVGGAEVGRKMSAGMSSVTGKMKGLLQVQTQADKIVEEATSQNFQEPDWAANLRICDMLNSGKLSGQDVVRGIKKRITVKHPMVQYLALILLETCAMNCDKVFSEVASERVLDEMVKMIDDPHTIAGNRNKILQLIQAWGESGEDLRYLPVFEETYKRLKSRGIRFPGHGNESEAPIFTSELPFPSPPLGIPVGYPSATLDQEQAYQNVFVPQVSNLSQEQKQEMFAVARNSIELLDTVLTSSPQQEALKDDLTTTLVEQCRQSQFTVRKLVEGAGDNEPLLFEALNVNDEIQRVLSKYEEMLKVPTSKSASVSEPASIPVNVEDEASPGAAQEDTLIRSRFSKPLKPHPRLGEDVAMSDLDDMIFGKKGGNSGERDSHKDDHHSLI*

Protein Length: 400

Fln nts: GTTTAAAA_-_ATGGAGAAGTTCAACTCTTTCGGAGAGCGAATCATGGTGGGAGGGGCCGAGGTGGGTCGAAAGATGAGCGCTGGAATGAGCAGCGTGACTGGCAAAATGAAGGGGCTTTTACAAGTGCAGACACAGGCCGACAAGATCGTGGAGGAGGCTACTTCTCAGAACTTCCAAGAGCCCGACTGGGCTGCCAATCTCAGGATCTGTGATATGCTCAACAGCGGGAAACTCAGCGGCCAGGATGTGGTCAGGGGAATTAAGAAGAGGATCACTGTGAAACACCCCATGGTTCAATACTTGGCTCTCATTCTCCTCGAGACTTGTGCCATGAATTGCGATAAGGTGTTCTCCGAGGTGGCTTCCGAGAGAGTTTTGGATGAGATGGTCAAAATGATTGACGATCCTCACACCATTGCCGGTAATCGAAACAAGATTTTGCAATTAATTCAGGCATGGGGAGAGTCTGGCGAAGATCTTCGTTATTTGCCCGTTTTCGAGGAGACATATAAGAGATTGAAATCAAGGGGGATAAGGTTTCCTGGACATGGCAATGAGAGTGAGGCTCCAATTTTCACTTCTGAACTGCCTTTTCCAAGTCCTCCATTAGGAATTCCAGTTGGATATCCCAGCGCCACCCTTGATCAAGAGCAAGCATATCAAAATGTGTTTGTTCCTCAAGTTAGTAACTTATCACAGGAACAAAAGCAGGAGATGTTTGCTGTAGCTCGAAACAGCATTGAACTTCTCGATACTGTTTTGACAAGCTCTCCTCAGCAAGAGGCACTTAAGGACGACCTTACAACTACGTTGGTAGAACAATGCAGACAATCTCAGTTCACTGTACGGAAACTAGTGGAGGGTGCTGGTGATAATGAACCCTTACTTTTTGAGGCTTTGAATGTCAATGATGAGATCCAACGTGTTCTTTCCAAGTATGAAGAAATGTTGAAGGTTCCAACATCCAAGTCTGCCAGTGTTTCTGAACCTGCATCTATCCCTGTTAATGTGGAAGATGAAGCTTCACCTGGTGCTGCCCAAGAAGATACTCTTATTAGGAGCCGCTTTTCAAAACCCTTAAAACCTCATCCCAGGCTTGGTGAGGATGTTGCAATGTCAGATCTGGATGACATGATATTTGGTAAGAAGGGAGGAAATTCTGGTGAGCGGGATTCTCACAAGGATGATCATCATAGCCTTATTTAG___GTTTTCTTCGTCTTCTAGCTTGATCCCACAGAGCAGGGAGCCATAAGGAGTGTTACTTTTTACTTGTATATTGAGATTTGGACCTCCTATTTAAAAAGAGTATGGTAACATACATACATTGTAGTGTGTACATGGTTGCTTCTCCTTTATGTAAATTTTTATTCGTTCTTTTTTGGTTTTTC

Fln Alignment:

sp_v1.1_unigene28644___MEKFNSFGERIMVGGAEVGRKMSAGMSSVTGKMKGLLQVQTQADKIVEEATSQNFQEPDWAANLRICDMLNSGKLSGQDVVRGIKKRITVKHPMVQYLALILLETCAMNCDKVFSEVASERVLDEMVKMIDDPHTIAGNRNKILQLIQAWGESGEDLRYLPVFEETYKRLKSRGIRFPGHGNESEAPIFTSELPFPSPPLGIPVGYPSATLDQEQAYQNVFVPQVSNLSQEQKQEMFAVARNSIELLDTVLTSSPQQEALKDDLTTTLVEQCRQSQFTVRKLVEGAGDNEPLLFEALNVNDEIQRVLSKYEEMLKVPTSKSASVSEPASIPVNVEDEASPGAAQEDTLIRSRFSKPLKPHPRLGEDVAMSDLDDMIFGKKGGNSGERDSHKDDHHSLI
D5AAB9_______________MEKFNSFGERIMVGGAEVGRKMSAGMSSVTGKMKGLLQVQTQADKIVEEATSQNFQEPDWAANLRICDMLNSGKLSGQDVVRGIKKRITVKHPMVQYWALILLETCAMNCDKVFSEVASDRVLDEMVKIIDDPHTIAGNRNKILQLIQAWGESAEDLRYLPVFEETYKRLKSRGIRFPGHGNESSAPIFTSELPLTSPPFGIPVGYPGAILDQQQGYQNVFVPQSSNLSQEQKQEVFAVARNSIEILSTVLTSSPQQEALKDDLTTMLVEQCRQSQFTVRKLVEGAGDNEPLLFEALNVNDEIQRVLSKYEEMLTAPTSKSANISEPASIPVNVEEEASPSASKEDALVRSRFSKSLKPHPRLGEDAAILDLDDMIFGKKGGNSGEWDSHKDDHQSLI

SNPs (tot: 3)

Position	A %	G %	T %	Probability
980		13	86	0.999973
1118	90		10	1.0
1192	84	16		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain