SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28640

Length: 1563 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28640

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[I] COG2267 Lysophospholipase	-	-	2.0e-22	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	esterase lipase thioesterase family protein	-	-	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	80%
Blast2go	Alpha/beta hydrolase, N-terminal	IPR022742	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL19

Fln msg:

Fln protein: MVGMAPDMAGEEHSKVKYEEEFIKSSRGVKLFTCKWVPADRQAKALICLCHGYGIECSIFMEDTGVRLAKAGYAVFGIDYEGHGKSAGTRCYIKSFDDLVADCATFFRRVAEGVEYREKARFLYGESMGGAVALLIHRNQPNFWNGALLVAPMCKITEELKPRPLVLSILWILTAMIPTWKLMPVEDILDVGIKDPDKRAELRANPYLYRGRPRLKTGFELLMASLDIEKRLDEVSLPFLILHGEEDKVTDPSVSQLLYSSAKSTDKTLKLYPNMWHGLTYGEPPEHIELVFSDIIAWLDERSVTG*

Protein Length: 308

Fln nts: AACTTACTCATGGTTTCTAAGTATACTTTCTCTTCAATCCCCTAATTTCGAGGTCCTTTGTCTGAGAGAATTTACATTCGATTACACCGTCGCCATCAATTTGATTACAACTGTATATTTGAGATGGACTGGTAAACTACTCCTGTCAGGACAGGATAGAACTTCCCTCACTAAAATTCAGTGTAATTTGTCAATGTTGTGTGTTAACCACCTCTGGACGAACTAATTTAGTTTCATGGAAGTGTTGAAAACTGCGAATGCAGTGGCCCTAGTTTATTCAAGTTCTGAGAACGGCTACCTGTACACCCTCTAAAACACAAGACTTCCTATATATGTCCTGTCAAACGCAAGTATTGAATTTCTCTCTTCAACCACGGCTTCCTATAGACACTCTTAGACACATGACTTTTTGTTACTGAGATCTCCGTTTATCCTGTGCTATGTTCAATTGCTGAGTAGCAGAAGGATTTTTGTGCAAGTTTCTACTGGATCGGTCCTCATAGATTTCAGATCCATCTGCTCTGTTCCTATACTGTAGTTGGA_-_ATGGTTGGAATGGCGCCGGATATGGCAGGGGAAGAGCACAGTAAAGTCAAATATGAAGAGGAGTTTATTAAAAGTTCACGAGGAGTGAAGCTCTTTACTTGCAAATGGGTACCGGCAGATAGGCAAGCCAAAGCCCTTATATGTCTCTGCCATGGCTATGGCATAGAGTGCAGCATTTTCATGGAAGACACAGGAGTGAGACTAGCAAAGGCTGGGTATGCAGTATTTGGTATAGATTATGAAGGACATGGCAAATCTGCTGGAACACGATGTTACATAAAAAGCTTCGATGACCTTGTAGCCGATTGTGCAACATTTTTCAGGAGAGTGGCTGAGGGCGTTGAGTATAGGGAGAAAGCGAGGTTCCTTTATGGTGAATCAATGGGAGGAGCCGTGGCACTTCTCATCCATCGAAATCAGCCTAACTTTTGGAATGGTGCTTTACTTGTTGCCCCTATGTGCAAGATAACAGAGGAATTAAAGCCTCGCCCCCTGGTTCTCAGCATATTGTGGATTCTAACTGCCATGATCCCTACGTGGAAGCTTATGCCCGTGGAAGACATTTTAGATGTGGGCATTAAGGACCCAGATAAGAGAGCGGAGCTGCGGGCAAACCCTTATCTTTATCGAGGAAGACCTCGTCTAAAGACTGGGTTCGAGCTGCTGATGGCAAGTTTGGACATAGAGAAACGACTGGATGAGGTGAGCTTGCCTTTTCTGATTCTTCATGGAGAAGAAGATAAAGTAACAGACCCATCTGTGAGCCAATTGCTGTATTCTTCTGCCAAAAGCACAGACAAGACGCTGAAACTGTATCCCAATATGTGGCATGGGTTGACATATGGAGAACCTCCAGAGCACATAGAATTAGTATTTTCAGACATTATTGCATGGTTAGACGAGAGAAGTGTAACAGGTTAG___GGTGCCTCCAATAGCGCCCTTTGGAAACATCCAGAAATAGTCTGCCATGAAAGCAACTACCAGAATAATATAGTGTATTCAGATTTTTATTGTACTTTG

Fln Alignment:

sp_v1.1_unigene28640___MAPDMAGEEHSKV-KYEEEFIKSSRGVKLFTCKWVPADRQAKALICLCHGYGIECSIFMEDTGVRLAKAGYAVFGIDYEGHGKSAGTRCYIKSFDDLVADCATFFRRVAEGVEYREKARFLYGESMGGAVALLIHRNQPNFWNGALLVAPMCKITEELKPRPLVLSILWILTAMIPTWKLMPVEDILDVGIKDPDKRAELRANPYLYRGRPRLKTGFELLMASLDIEKRLDEVSLPFLILHGEEDKVTDPSVSQLLYSSAKSTDKTLKLYPNMWHGLTYGEPPEHIELVFSDIIAWLDERS
B8LL19_______________MAPDMPGEQHSNVVKYEEEFIQSSQGVKLFTCRWVPADRQAKALICLCHGYGIECSIFMKDTGVRFAKAGYAVFGIDYEGHGKSAGTQCYIKSFDDLVADCATFFRSVAESVEYREKARFLYGESMGGAVALLIHRKQPNYWSGAVLVAPMCKITEELIPPPLVLSILWTLTAIIPTWKLMPTQDITDVGIKDPDKRMELRANPYLYRGRPRLKTAFELLMTSLDIEKRLDEVMLPFLIVHGEDDRVTDPSVSKLLYASAKSLDKTLKLYPNMWHGLTYGEPPEHIELVFSDIIAWLGKRS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
211		66		33	0.997452
212		66	33		0.997452
213			33	66	0.997452
214		66	33		0.997452
215			33	66	0.997452
231			75	25	0.996473
232			25	75	0.996473
233			25	75	0.996473
234			25	75	0.996473
235		75	25		0.996473
249	80			20	0.995493
250	80		20		0.995493
251	80		20		0.995493
252		80	20		0.995493
253			20	80	0.995493
316		80		20	0.995493
340		20	80		0.995493
382	20	80			0.995493
410		20		80	0.995493
474			16	83	0.994512
567		14	85		0.993533
629		20		80	0.995493
744	85		14		0.993533
1489	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain