SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28632

Length: 1173 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28632 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	fatty aldehyde decarbonylase (EC:4.1.99.5)	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	sterol desaturase	-	-	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A835

Fln msg: Distance to subject end: 330 aas, your sequence is shorter than subject: 343 - 623

Fln protein: MASKPGPLTPWPWAKLGSLKYLLLLPLVIKAIHTNLLGGQEADNFSLILLIFIVVRYLHNQLWISISRYQNAISKRQIQSKSIEFEQVDREGTWDDYIIFYAVLLFLAHAVIPGVSNLPLWNTKGLIVTSLAHVGPVEFTYYWAHRALHHHFLYSRYHSHHHSSFVTEPITSVVHPFAEHILYAAIFSMAELPLAITNTNSIGVLFGYHLWFDLMNNMGHCNFEFLPQFAFKIFPFLKYFMYTPS*VIHGLCIY*YKKDGWLSSMSLKFLASWLSSCHFTFLFPFRF*NEKCFCRFHSLHHSQVHTNFSLFMPIYDYLYGTVDKSSDTLYEAASEGRKESVDF

Protein Length: 344

Fln nts: ATGGGTGGGGATCCATGGTGAAGGATAAACTCTGAGAATAATATTCTCTCTATGCACGCCTTCTGATAGCTAGGCGTTTGCTTATACTTTGTTTATCTTCAAGAAAGTATACATCCCTAGTCCTTGCTTCAAATTTCCAACAAG_-_ATGGCATCCAAGCCTGGGCCTCTTACGCCATGGCCATGGGCAAAACTTGGCAGCTTGAAGTACCTCCTCCTGCTACCATTGGTGATCAAAGCTATTCATACCAATTTATTAGGAGGGCAAGAGGCAGATAATTTCAGTCTCATTCTTCTTATCTTTATCGTTGTTCGATACCTTCATAACCAGCTATGGATAAGCATTTCTCGTTATCAGAATGCAATAAGCAAGCGCCAGATTCAATCCAAAAGTATCGAGTTTGAGCAGGTTGATCGAGAGGGAACCTGGGACGATTATATTATTTTCTATGCTGTGTTGCTTTTCCTCGCTCATGCCGTCATTCCAGGAGTTTCGAATCTTCCTCTGTGGAATACGAAAGGTCTTATTGTGACAAGTTTGGCTCACGTCGGGCCTGTCGAATTCACCTATTACTGGGCACATAGAGCTCTGCATCATCATTTTCTGTATAGCCGGTACCATTCGCATCACCACTCTTCTTTTGTGACGGAACCAATTACATCTGTGGTGCATCCATTTGCAGAACATATTTTGTATGCAGCGATCTTTTCCATGGCTGAACTACCTCTAGCTATCACCAATACTAATTCCATTGGTGTTCTGTTTGGGTACCATTTATGGTTCGATTTAATGAACAATATGGGGCACTGCAACTTCGAGTTTCTCCCCCAGTTTGCATTTAAGATTTTCCCCTTTCTGAAATACTTCATGTACACACCCTCGTAAGTAATTCACGGGCTATGTATATACTAATACAAAAAGGATGGCTGGCTGTCCAGTATGTCTTTGAAATTTCTAGCGAGCTGGCTGAGTAGCTGCCACTTCACTTTCCTTTTTCCCTTTCGATTCTAAAATGAAAAATGCTTTTGCAGATTTCATTCTCTTCATCATTCTCAAGTGCATACCAACTTCAGTCTCTTCATGCCAATTTACGACTATCTTTACGGAACAGTCGACAAATCTTCGGATACTCTCTACGAGGCTGCAAGTGAAGGGCGCAAAGAGAGCGTTGATTTC

Fln Alignment:

sp_v1.1_unigene28632___LTPWPWAKXXXXXXXXXXXLVIKAIHTNLLGGQEADNFSLILLIFIVVRYLHNQLWISISRYQNAISKRQIQSKSIEFEQVDREGTWDDYIIFYAVLLFLAHAVIPGVSNLPLWNTKGLIVTSLAHVGPVEFTYYWAHRAXXXXXXXXXXXXXXXXXFVTEPITSVVHPFAEHILYAAIFSMAELPLAITNTNSIGVLFGYHLWFDLMNNMGHCNFEFLPQFAFKIFPFLKYFMYTPS*VIHGLCIY*YKKDGWLSSMSLKFLASWLSSCHFTFLFPFRF*NEKCFCRFHSLHHSQVHTNFSLFMPIYDYLYGTVDKSSDTLYEAASEGRKESV
D5A835_______________LLDWPWAYLESLKYVLYGPLIAKAVHTNLYGGKEADNWCFHILLLTSLRYVTYQLWATFSNMYCLSHRYKICKKGAEFDQMDREWDWDNFLLLQAFMATAAHHFLPFFRDMPAWNAGGLICLAILRMGPAEVLYYWAHRAFHKDFLFQRYHSLHHAAIVLQPQTAGTATFLEHIGLTIIMAVPMVGASWMGGASMGMIYIYCLLFDFLRYMGHSNVEIVPETIFRCLPPLKYLIYTP--------------------------------------------------LYHTLHHTEMDTNFCPFMPLYDYLGHTINSKSWDLHRSMSAGQVEDV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
311	83		16		0.994512
913		90	10		0.90298
1112	20		80		0.999996
1116		90		10	0.90298
1117			20	80	0.999996
1123	80		20		0.999996
1141	22		77		0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain