SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28624

Length: 1252 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28624

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dehydrogenase/reductase SDR family member 2 n=2 Tax=Zea mays RepID=B6TBX0_MAIZE	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	short chain alcohol dehydrogenase	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	indolebutyric acid metabolic process	GO:0080024	Biological Process	80%
Blast2go	response to indolebutyric acid stimulus	GO:0080026	Biological Process	80%
Blast2go	peroxisome	GO:0005777	Cellular Component	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNV2

Fln msg: Overlapping hits, possible frame ERROR between 330 and 300,

Fln protein: MEGTSKRFKGKVAVVTASTQGIGFAIAERLGLEGASVVVSSRKQKNVEEAVERLRAKGIDVLGxxxxxxxxxxxxDLIQKTVDKHGRIDILVSNAAANPTLDPIVSVPEPVLDKLWEINVKATILLVQDASAHLSQESSIIIISSIAAYRPEAMMAMYGVTKTALLGLTKALAAEMAPNTRVNTVAPGFVPTNFADFLVRDEDIKNSIEERTLLGRLGKTTDMASAVAFLASSDASYITGETLVVAGGMPSRL*

Protein Length: 255

Fln nts: ATTATGTTCATTCTGGCCAGTGTGAGAGTTGTTGAATTGTAGTAGATGGTATTTATTATTACCCGGAGTTCTGAATAGCGGCATCGTCGAGAGCGAGGGGAGGGTGGG_-_ATGGAAGGCACAAGTAAGAGATTCAAAGGGAAGGTAGCGGTGGTGACCGCTTCAACACAGGGCATAGGGTTCGCCATTGCAGAGCGCCTTGGCCTCGAAGGCGCTTCCGTTGTCGTCTCATCACGAAAACAGAAAAATGTAGAGGAAGCAGTGGAAAGGCTGAGAGCCAAAGGGATTGATGTTCTGGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATCTCATCCAAAAGACTGTAGATAAACATGGTCGCATAGACATTCTGGTCTCAAATGCAGCTGCTAATCCAACTTTGGACCCCATTGTTTCAGTTCCAGAGCCTGTACTTGATAAACTTTGGGAGATTAACGTCAAGGCCACTATTCTTCTTGTCCAGGATGCTTCTGCTCACTTGTCACAAGAGTCATCAATTATCATAATTTCGTCAATTGCTGCTTACAGGCCAGAGGCAATGATGGCCATGTATGGGGTTACCAAGACTGCTCTTTTAGGGCTGACGAAGGCTCTTGCTGCTGAAATGGCACCAAATACAAGGGTTAATACTGTAGCTCCTGGTTTTGTACCCACAAATTTTGCTGATTTCCTTGTTAGGGATGAAGATATTAAGAATAGCATTGAAGAGAGAACTTTACTTGGTAGGCTGGGAAAAACAACCGATATGGCTTCAGCTGTTGCCTTTCTAGCATCCAGTGATGCTTCATACATAACTGGAGAAACACTGGTGGTAGCTGGAGGAATGCCATCAAGGCTCTAG___ATTGGCCCTTGGGGTTTATGGATCTATAGTATGTTCATGTCTCTTTGCATTCCATTCAACTTATTTTTCTCACTTCTCTTATTGATTTTCAGCAAATTTAATCTAGAAATTATTGGGAAAGGTCAATCTTCCTGAAGTCATCAGATGAATTGAACACAACATATGACAGTTCTAAAATTTGTTGCTAGAATTTCCAGCAAATGCTGTTCCATATTGCTAGTCATTGAATGAGCTTGATGCATGATGCGGAATGCAACAATTCAAATTATTATCCTAACTTTGGTATCAAATATTGATATTCAACAAGCAGTGACAATCATGGTGCTTGAATTCTCATGGCTGCTATTTGGTTTGGCTGTTGCACTGTGGGCTCTAAAGCCCAT

Fln Alignment:

sp_v1.1_unigene28624___TSKRFKGKVAVVTASTQGIGFAIAERLGLEGASVVVSSRKQKNVEEAVERLRAKGIDVLxxxxxxxxxxxxRDLIQKTVDKHGRIDILVSNAAANPTLDPIVSVPEPVLDKLWEINVKATILLVQDASAHLSQEXXXXXXXXXAAYRPEAMMAMYGVXXXXXXXXXXXXXXEMAPNTRVNTVAPGFVPTNFADFLVRDEDIKNSIEERTLLGRLGKTTDMASAVAFLASSDASYITGETLVVAGGMPSRL
A9NNV2_______________TGRRFQGKVAVVTASTQGIGFAIAERLGLEGASVVVSSRRQKNVEEAVEKLRAKGIDVLxxxxxxxxxxxxRDLIQKTVNKYGGIDILVSNAAANPTVNPIVEVPEPVLDKLWEVNVKATILLVQDAAAHLSQESSIIIISSIAAYSPEASMAMYGVTKTALLGLTKALAAEMAPNTRVNTVAPGFVPTHFADFLVRNEDVKNSIEERTLLGRLGKTTDMASAVAFLASSDASYITGETLVVAGGLPSRL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
234	90	10			0.90298
238	10	90			0.90298
243	90	10			0.90298
266	10		90		0.90298
1117		81		18	1.0
1177	12		87		0.992554
1180	12		87		0.992554
1181	12			87	0.992554
1183	85			14	0.993533
1184	14	85			0.993533
1202		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain