SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28604

Length: 1186 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28604

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	nucleic acid binding nucleotide binding	-	-	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ61

Fln msg: your sequence is shorter than subject: 296 - 345

Fln protein: HLRQFNNPQPQYLHHHNYYPTQQQQQAHQDEVRTLFIAGLPDDVKYREIYNLFREFPGYRTCQLRNSERRDQVYPFTVFTDQQSALAAMHALNGMDFDPETGKVLHIELAKANSRSKRSRTDDGGSSSSDKRIRGPNSVPEVYPDAGVGGTVHIPGMANSGYSDTSGFPSTQSGGMKEAAVFQDGVPGLTTGQPAEPTQPAINPPCPTLFIANLGSTCSEEELTQVFSRCPGFLKLKMQIRGGLPVAFVDFQDITSSTQALNHLQNTMLQSSDRGGMCLEYAKARMGLPKRGRKP*

Protein Length: 297

Fln nts: GCACCTCCGCCAGTTCAATAACCCCCAACCACAATACCTTCATCATCACAATTATTATCCTACTCAACAGCAGCAGCAAGCACACCAGGATGAGGTCCGGACTCTCTTCATCGCTGGTCTCCCCGATGATGTCAAGTATCGTGAAATTTATAACCTTTTCCGCGAGTTCCCTGGCTACCGAACATGTCAGCTCAGGAATTCGGAACGCCGAGACCAGGTGTATCCATTTACAGTATTCACAGACCAGCAATCTGCCTTAGCTGCAATGCACGCTCTAAATGGCATGGACTTTGATCCAGAGACGGGGAAAGTGTTGCATATAGAGCTTGCAAAAGCCAATTCCAGGTCCAAGCGGTCCCGAACAGATGATGGAGGATCCAGCTCTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGAAGTCTATCCAGATGCGGGAGTTGGCGGCACTGTGCACATTCCTGGAATGGCCAATTCCGGTTACAGCGACACGAGTGGGTTTCCATCCACACAGAGTGGTGGGATGAAGGAAGCTGCTGTTTTTCAAGATGGCGTTCCTGGCCTGACTACAGGACAGCCTGCAGAACCTACTCAACCAGCTATTAATCCACCATGCCCAACTCTCTTTATTGCGAATCTTGGGTCAACATGTTCCGAGGAGGAATTGACACAAGTGTTCTCAAGATGTCCAGGATTCCTCAAGCTGAAGATGCAAATTAGAGGTGGATTGCCAGTTGCTTTTGTTGACTTCCAGGATATCACATCTTCCACCCAAGCTCTAAATCATCTTCAAAATACTATGCTGCAGTCATCTGATCGAGGTGGTATGTGTTTGGAATATGCAAAAGCAAGGATGGGGCTTCCAAAACGAGGGAGGAAGCCGTAG___GCTTGTGCTTATTATAAAAATGAATGAATAAGGAAACTAGTGGGAATGAGATGGGTACCCTCTCATCAAACAACACAACAATGCTTATTCCATGCAGTTGTCATGTGTTGTCTCCTAGTGTGGAGCTTTGTATATGATGAAGAGTTAACATCTACACATTTGCTGAGTAACACTTTTTCTTTATTGGTCTACATATTTCTGTATAGTCATTTGCTGCTATTGTAACTAGTATTTAGAGTTGAATGCCTTTTTCCTTGCATGTTTCTTGAGAAAATGGTGGAAAATACTCTCTTGAAC

Fln Alignment:

sp_v1.1_unigene28604___PQPQYLHHHNYYPTXXXXXAHQ------DEVRTLFIAGLPDDVKYREIYNLFREFPGYRTCQLRNSERRDQVYPFTVFTDQQSALAAMHALNGMDFDPETGKVLHIELAKANXXXXXXXXXXXXXXXXXXXXXXPNSVPEVYPDAGVGGTVHIPGMANSGYSDTSGFPSTQSGGMKEAAVFQDGVPGLTTGQPAEPTQPAINPPCPTLFIANLGSTCSEEELTQVFSRCPGFLKLKMQIRGGLPVAFVDFQDITSSTQALNHLQNTMLQSSDRGGMCLEYAKARMGLPKRGRK
A9NZ61_______________PEPQYLHHYNYYLSQQQQQPQQQQQPQQDEVRTLFIAGLPDDVKHREIYNLFREFPGYRSCQLRNSEGGTQVYAFTVFTDQQSALAAMHALNGMDFDPETRAVLYIDLAKSNSRSKRSRTDDGGSNSSDKRIRGPNSVPGVYPDAGVGGTVHMPGMANSGYSDTSGFPSTQSGGMMEASIFQDGVPGLTTGQSTAPTQPASNPPCPTLFVANLGPTCSEEELTQVFSRCPGFLKLKMQIIGELPVAFVDFQEITSSTQALNHLQNAMLLSSDRGGMRLQYAKARMGRPRRGRK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
561		33		66	0.997452
610	66			33	0.997452
682			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain