SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28601

Length: 2280 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene28601
CCAGTAGAGATAACTTTCCCACGCTAAACGACTGTACGAAAACTTTTATTTACTCTTCTCATCAGACGTCGTGAGTTCGAAACCTCAGAGATATAGGGTTTGTTTCCAAAGCCATGGCGGATTCAGTAGAAGAGCAGCAACAGAGAGGTAACGGGGTCGAATCCCGCGAATCGGAAATCAGTGACCTTGAAGACGATGAGAAATACCCCGAAACGAAGCGGATTGCGGCACGATCCTCCATGATCGATTCTTTCAAAACCTGTGGATTTTGTGGCCTCAGCATCGACAAGGAAGACTTGAGGAAAAGATTAATCATCCCAGAGTATCTGAGAATTGCCATGGTGGAAGCTGTGAGAAACGAAGAATTTGCTTACGACGAAGGTCGACATCGCGGGGACGGCACCAGCACTGCCCCGGAAGCTGCCATTATTGTCTTTATTAATTTGAAGAGCGGAGGACGTCGAGGCCCCACGTTTAAGGCTCGGCTTCAGGAGCTTATCAGTGAAGAGCAGGTATTTGATCTCTCAGAAGTTAAACCCTCAGATTTTCTTCGTCATGGTCTAGGTTGTTTGGAAAAACTGGCTAGCTTTGGAGATCATTGTGCTAAAGAAACCCGTGACAGAATACGCATTATCGCAGCAGGAGGTGATGGGACAGTGGGATGGATACTGGGAAGTATTGTTGAACTTCGTTTAGAAAGTCATAAGCGAATCCCACCAGTTGGAATCATTCCTCTTGGCACAGGCAATGATCTAGCTCGAAGTTTTGGTTGGGGTGGATCATTTCCCATGGCATGGAGGTCGGCAGTCAAGAGGTACTTGGACAGAGCAGTTAGTGGTCCAATTTGTCGCCTTGACAGTTGGCAGGTTATGTTGACACCGATAGCTGGACAAGAATTAAATCTACCTCCTGCTTTTAGACCACAAGAAGCTCCAACTCATCAGCTTGGTTATGGGATTGAAGATAGTGTATCATCAAATAATTCCACTTCTTATAAAGGCACATTTTACAACTACTTCAGCATCGGTATGGATGCCCAAATAGCCTATGGGTTTCATCATTTGCGAAATGAGAAACCATATCTTGCTCGAGGCCCGGTTTCTAATAAGATAATCTATTCTGGGTATGGTTGTGCTCAAGGATGGTTTTGCACACCTTGTTCAGCAAATCCACGAGTGAGGGGAATAAACAACATTGTACAGATGCACATCAAAAAACAAAGTTGTTCTGATTGGGAGATTCTTCGTATCCCTTCAAGTGTCCGAGCAGTTGTTGCACTAAATCTTCACAATTATGCAAGTGGACGAAATCCTTGGGGCCACCCTAGGCCAGACTACTTGGAAAAGAGAGGTTTTGTTGAAGCACACCCTGATGATGGATTGCTTGAAATCTTTGGGCTAAAGGAGGGGTGGCATTCATCGTTTGTCATGATTGATCTTATATCAGCAAAGCATCTTGCTCAGGCAGCCGCTTTCAAATTAGAACTGAGGGGTGGGCGGAGGAAGCGAGCTTACTTGCAGATGGATGGTGAGCCCTGGCAGCATCCACTTAGCGAGCGCGATTCGACAATGATTGAGATAACAAGGGTTCCTTTCCAATCCCTCATGATCAGTGGAGAATGAAGAACTTTTGGATTATCTCGTATTCAGCTTCAGAGTGTCCGAGTTGGGATGACTGAGCATGTACATCTATAAATTCCACTTGTGAATATCAGTGCTACTAGTGGCTTTTGCGTATTCAAAATCTATGTGTAATCTTCCAATGAAACTCTTCCATTTTTTTGTAATTAAAGCAATTTGACATTGTTGCACCTGCCCAGTGAGCCGAGGATATGTTCACAGTACGAATAAATGTGTCGGTAAGAAATTGTAGCATGTGTTGGTAAGGAATTATTTATGCGGTAAACACTGTAATGTAGTCCTATATTTCAGTTTTGATGTCCTTTTGTCACAGTGGTTTAGGTTAATGGTATTTATATACCGATCCACCTTACCCATGTTAAACGTATAAACAATAATAGCTGGAAATATTTAAGCATGGCCTGTGTGCTTCTCCTCGTACTGCTGCTTAGAGTATAGTTAACACGTATTTATAGGGCTGCCAAGAGATTCACAGATTTGGCCTTGCAAATGTATCGAGCATTTTAGCTGTAGGCGAACTTATTTTCCTTCAAATTAAGTAATTTCAATTTACAAGGCTGCCAAGAGTTTTACAGGTTTGGCCTCGCAAACGTATGAAGCCTGTTAACTGAATAATGTTAATTTGATATGGCAATTAATT

Ace file of the UniGene sp_v1.1_unigene28601 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	diacylglycerol kinase, alpha, putative (EC:2.7.1.107)	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	diacylglycerol kinase	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTS1

Fln msg: your sequence is longer than subject: 503 - 33

Fln protein: MADSVEEQQQRGNGVESRESEISDLEDDEKYPETKRIAARSSMIDSFKTCGFCGLSIDKEDLRKRLIIPEYLRIAMVEAVRNEEFAYDEGRHRGDGTSTAPEAAIIVFINLKSGGRRGPTFKARLQELISEEQVFDLSEVKPSDFLRHGLGCLEKLASFGDHCAKETRDRIRIIAAGGDGTVGWILGSIVELRLESHKRIPPVGIIPLGTGNDLARSFGWGGSFPMAWRSAVKRYLDRAVSGPICRLDSWQVMLTPIAGQELNLPPAFRPQEAPTHQLGYGIEDSVSSNNSTSYKGTFYNYFSIGMDAQIAYGFHHLRNEKPYLARGPVSNKIIYSGYGCAQGWFCTPCSANPRVRGINNIVQMHIKKQSCSDWEILRIPSSVRAVVALNLHNYASGRNPWGHPRPDYLEKRGFVEAHPDDGLLEIFGLKEGWHSSFVMIDLISAKHLAQAAAFKLELRGGRRKRAYLQMDGEPWQHPLSERDSTMIEITRVPFQSLMISGE*

Protein Length: 504

Fln nts: CCAGTAGAGATAACTTTCCCACGCTAAACGACTGTACGAAAACTTTTATTTACTCTTCTCATCAGACGTCGTGAGTTCGAAACCTCAGAGATATAGGGTTTGTTTCCAAAGCC_-_ATGGCGGATTCAGTAGAAGAGCAGCAACAGAGAGGTAACGGGGTCGAATCCCGCGAATCGGAAATCAGTGACCTTGAAGACGATGAGAAATACCCCGAAACGAAGCGGATTGCGGCACGATCCTCCATGATCGATTCTTTCAAAACCTGTGGATTTTGTGGCCTCAGCATCGACAAGGAAGACTTGAGGAAAAGATTAATCATCCCAGAGTATCTGAGAATTGCCATGGTGGAAGCTGTGAGAAACGAAGAATTTGCTTACGACGAAGGTCGACATCGCGGGGACGGCACCAGCACTGCCCCGGAAGCTGCCATTATTGTCTTTATTAATTTGAAGAGCGGAGGACGTCGAGGCCCCACGTTTAAGGCTCGGCTTCAGGAGCTTATCAGTGAAGAGCAGGTATTTGATCTCTCAGAAGTTAAACCCTCAGATTTTCTTCGTCATGGTCTAGGTTGTTTGGAAAAACTGGCTAGCTTTGGAGATCATTGTGCTAAAGAAACCCGTGACAGAATACGCATTATCGCAGCAGGAGGTGATGGGACAGTGGGATGGATACTGGGAAGTATTGTTGAACTTCGTTTAGAAAGTCATAAGCGAATCCCACCAGTTGGAATCATTCCTCTTGGCACAGGCAATGATCTAGCTCGAAGTTTTGGTTGGGGTGGATCATTTCCCATGGCATGGAGGTCGGCAGTCAAGAGGTACTTGGACAGAGCAGTTAGTGGTCCAATTTGTCGCCTTGACAGTTGGCAGGTTATGTTGACACCGATAGCTGGACAAGAATTAAATCTACCTCCTGCTTTTAGACCACAAGAAGCTCCAACTCATCAGCTTGGTTATGGGATTGAAGATAGTGTATCATCAAATAATTCCACTTCTTATAAAGGCACATTTTACAACTACTTCAGCATCGGTATGGATGCCCAAATAGCCTATGGGTTTCATCATTTGCGAAATGAGAAACCATATCTTGCTCGAGGCCCGGTTTCTAATAAGATAATCTATTCTGGGTATGGTTGTGCTCAAGGATGGTTTTGCACACCTTGTTCAGCAAATCCACGAGTGAGGGGAATAAACAACATTGTACAGATGCACATCAAAAAACAAAGTTGTTCTGATTGGGAGATTCTTCGTATCCCTTCAAGTGTCCGAGCAGTTGTTGCACTAAATCTTCACAATTATGCAAGTGGACGAAATCCTTGGGGCCACCCTAGGCCAGACTACTTGGAAAAGAGAGGTTTTGTTGAAGCACACCCTGATGATGGATTGCTTGAAATCTTTGGGCTAAAGGAGGGGTGGCATTCATCGTTTGTCATGATTGATCTTATATCAGCAAAGCATCTTGCTCAGGCAGCCGCTTTCAAATTAGAACTGAGGGGTGGGCGGAGGAAGCGAGCTTACTTGCAGATGGATGGTGAGCCCTGGCAGCATCCACTTAGCGAGCGCGATTCGACAATGATTGAGATAACAAGGGTTCCTTTCCAATCCCTCATGATCAGTGGAGAATGA___AGAACTTTTGGATTATCTCGTATTCAGCTTCAGAGTGTCCGAGTTGGGATGACTGAGCATGTACATCTATAAATTCCACTTGTGAATATCAGTGCTACTAGTGGCTTTTGCGTATTCAAAATCTATGTGTAATCTTCCAATGAAACTCTTCCATTTTTTTGTAATTAAAGCAATTTGACATTGTTGCACCTGCCCAGTGAGCCGAGGATATGTTCACAGTACGAATAAATGTGTCGGTAAGAAATTGTAGCATGTGTTGGTAAGGAATTATTTATGCGGTAAACACTGTAATGTAGTCCTATATTTCAGTTTTGATGTCCTTTTGTCACAGTGGTTTAGGTTAATGGTATTTATATACCGATCCACCTTACCCATGTTAAACGTATAAACAATAATAGCTGGAAATATTTAAGCATGGCCTGTGTGCTTCTCCTCGTACTGCTGCTTAGAGTATAGTTAACACGTATTTATAGGGCTGCCAAGAGATTCACAGATTTGGCCTTGCAAATGTATCGAGCATTTTAGCTGTAGGCGAACTTATTTTCCTTCAAATTAAGTAATTTCAATTTACAAGGCTGCCAAGAGTTTTACAGGTTTGGCCTCGCAAACGTATGAAGCCTGTTAACTGAATAATGTTAATTTGATATGGCAATTAATT

Fln Alignment:

sp_v1.1_unigene28601___MDGEPWQHPLSERDSTMIEITRVPFQSLMISGE
C0PTS1_______________MDGEPWQHPLSESDSTMIEITRVPFQSLMISGE

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
339	14		85		0.993533
456		88	11		0.923564
648			33	66	0.997452
653	66		33		0.997452
657	33			66	0.997452
659			33	66	0.997452
660	33			66	0.997452
662	66		33		0.997452
833		20		80	0.995493
834	20			80	0.995493
1190	16		83		0.994512
1403		90		10	0.90298
1470		88		11	0.923564
1517	66	33			0.997452
1518	66	33			0.997452
1519	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain