SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28594

Length: 1386 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28594

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0625 Glutathione S-transferase	-	-	6.0e-10	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	62%

Source	InterPros	Term	Type	Identity
Blast2go	Glutathione S-transferase, N-terminal	IPR004045	-	62%
Blast2go	Glutathione S-transferase, C-terminal	IPR004046	-	62%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	62%
Blast2go	Thioredoxin fold	IPR012335	-	62%
Blast2go	Thioredoxin-like fold	IPR012336	-	62%
Blast2go	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACH8

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: LDFYYHPLSLDCQKVCLVMEEKNTKYNPHIVDPFKARNLDAEFFRQSPNGSIPVLITADQVFCDSLTMIRYLAKIGKPLGNKRVDQSKVQEWLEKIDSWDSKLFTLNHCPSDHAIHFFSKFRRQVVITRLVENPDLAEKYHNKLQTMHAMEEMLKDQEALASNTNELIRLLNDAEKQLTNTEFLAGAEFSVADCAFIPVLARIEILKLDKEYFRKHPRLIYYFEQMKERPSYQTVIGPYSTFFGKMKILLPSICNMSIRRLLHKY*

Protein Length: 267

Fln nts: TAGCATTGAGGCTTCTCCAGTAATTGAACGCATCAAAGTGCGATTTTATAATAGATTACATACTGAATGAAAAAATCCGTCCTCTGTCTCTGAGAATAATTTACCAGCCTAATTTTTCCCTTTCACATTGCTATATGCATCACATTCATTGCTGTCGGAAACAGCAGTAAGAAGCAGGTCTGTCAATTATCTATTGCAAGGTCTGTGAACTGTAAGGCATTCAAT_-_ATGATTGGATTTTTATTACCATCCCCTTTCACTTGACTGCCAAAAGGTATGCTTGGTGATGGAAGAGAAAAATACGAAGTATAACCCCCACATTGTGGATCCTTTCAAAGCAAGGAATTTGGATGCAGAGTTTTTCAGGCAAAGTCCTAATGGTAGCATTCCTGTACTAATCACTGCGGATCAAGTTTTCTGTGACTCACTGACTATGATTCGGTATCTTGCCAAGATTGGCAAGCCTTTAGGCAATAAAAGGGTAGATCAGAGCAAGGTCCAGGAGTGGCTAGAGAAGATTGATTCATGGGACTCGAAACTCTTTACACTAAATCACTGTCCAAGTGATCACGCTATTCATTTTTTTAGCAAATTCAGAAGGCAAGTTGTCATTACTCGTCTTGTGGAAAATCCTGATTTGGCAGAAAAATATCACAACAAACTTCAAACCATGCATGCCATGGAGGAAATGTTGAAGGATCAGGAGGCTTTGGCTTCAAACACGAATGAACTTATAAGGCTACTCAATGATGCTGAGAAACAGCTTACAAACACAGAGTTTTTGGCTGGAGCTGAGTTTTCTGTGGCAGATTGTGCATTTATCCCTGTGCTTGCCAGAATAGAGATTTTGAAGTTGGACAAAGAGTATTTTCGGAAGCATCCTCGTCTTATATATTACTTCGAGCAGATGAAGGAAAGACCAAGCTATCAGACTGTAATAGGCCCATATTCCACCTTTTTTGGAAAGATGAAAATTTTATTGCCTTCTATCTGTAATATGAGCATCAGGAGATTGCTACATAAATACTAGTATGCATGGTATTATTTTGTTGTCCTGTATCTGTAATATGATCATGAGGCTGTTGCATAAATATAGTATGCATATGATTATTTTGTTCTGCATGATTACAGACTATATAGAATCCTCAACCCCTTAGATGACCAAGCAAGCAACGAATACAATAGCATAGTCGTGAAGCTTTTGAAGGGCCTATTGAGATTTTTCTGCCCGCTATAGAAATTTGGTGAGCTCTGTTGTAAACTGATTCACAGGCAGGCTAGAATTTTGAAGTGGGCTTAGCTGTTGGTTAAGCCACTGGAACTGTTGATTCCTTTTTTTCTATGGGAATGTTAATTGTCTTTGACAGCGAGCATACGGGCTAAAAAAAC

Fln Alignment:

sp_v1.1_unigene28594___LDFYYHPLSLDCQKVCLVMEEKNTKYNPHIVDPFKARNLDAEFFRQSPNGSIPVLITADQVFCDSLTMIRYLAKIGKPLGNKRVDQSKVQEWLEKIDSWDSKLFTLNHCPSDHAIHFFSKFRRQVVITRLVENPDLAEKYHNKLQTMHAMEEMLKDQEALASNTNELIRLLNDAEKQLTNTEFLAGAEFSVADCAFIPVLARIEILKLDKEYFRKHPRLIYYFEQMKERPSYQTVIGPYSTFFGKMKILLPSICNMSIRRLLHKY
D5ACH8_______________MEFHYHPLSLDCQKVCLVMEEKNTKYIPHLVNPFKARNLDAEFFRQSPNGRIPVLVTADQVFCDSLTMIRHLDKIGKPLGDKRVDQSKVQEWLEKIDSWDSKLFTLNHCPSGHALHFYSKFKRQVVITRLVENPDLAEKYHNKLQTMHAMEEMLKDQEALASNTNELISLLNDAEKQLTDTEFLAGAQFSVADCAFIPVLARIEVLKLDKEYFRKRPRLIYYFEQMKERPSYKTVIGPYSTIFGNMKILLPSICNMSIRRLLHKY

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
444	33			66	0.997452
445		66	33		0.997452
448			66	33	0.997452
450		66		33	0.997452
695	83		16		0.994512
865		14	85		0.993533
903	75			25	1.0
904		25	75		1.0
905		75	25		1.0
906	75			25	1.0
909		25		75	1.0
910		25	75		1.0
911	75			25	1.0
912	75			25	1.0
916	75	25			1.0
917	75			25	1.0
920		75		25	1.0
923	75	25			1.0
924			75	25	1.0
934		11		88	0.923564
937	88	11			0.923564
938	88		11		0.923564
942	11		88		0.923564
945		88		11	0.923564
946	88		11		0.923564
947			11	88	0.923564
948	88	11			0.923564
950			11	88	0.923564
951		88		11	0.923564
956	16			83	0.994512
1174		50	50		1.0
1186		87		12	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain