SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28577

Length: 1228 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28577

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Salt tolerance protein 1 n=1 Tax=Beta vulgaris RepID=Q711N4_BETVU	-	-	2.0e-25	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	salt tolerance protein 1	-	-	4.30125e-25	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Hyaluronan/mRNA-binding protein	IPR006861	-	4.30125e-25	68%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
863		11		88	0.923564
875		10		90	0.90298
971	20		80		0.995493
972	20		80		0.995493
973	20			80	0.995493
987		66		33	0.997452
1019	33		66		1.0
1058		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1	15	TGG TGG TGG TGG TGG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain