SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28565

Length: 381 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene28565
CTAAATACATTGGCAACTGCTTACAAGATTCTTGGAGAAGATATTTGGAGATTTGTTGGAAAGCTAACAGATGCTCAGAAGAGTATGCTTGATGACAAATTCAAATGGAAAGCTCGTGAAATGGACAAGAGAAAAGAGGGGAAGCCTGGTGAAGCTAGAGCATCTCTGAGGCGCTCTGTTAGAGACAATGGATTAGAGATTGGAGATAAACAAACATGTACAATAGGTTTATATGAACTGTACCGCATCACACAATTATATCCACAGGTAGACATATTTTCTCAACTCCAAAATGCAAGTGAAGCATTTCGCACGTACATCAGAGATGGCCTAGCACAGATGGAAAAAAAATGCAGCTGCTGGTAGAACACCTTCAAGTGT

Ace file of the UniGene sp_v1.1_unigene28565 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MOR2; microtubule organization protein	-	-	8.0e-27	78%
FL-Next	sp=Protein MOR1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	75%
Blast2go	microtubule organization protein	-	-	1.11352e-28	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	microtubule cytoskeleton organization	GO:0000226	Biological Process	1.11352e-28	92%
Blast2go	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	1.11352e-28	92%
Blast2go	microtubule binding	GO:0008017	Molecular Function	1.11352e-28	92%
Blast2go	microtubule	GO:0005874	Cellular Component	1.11352e-28	92%
Blast2go	preprophase band	GO:0009574	Cellular Component	1.11352e-28	92%
Blast2go	spindle	GO:0005819	Cellular Component	1.11352e-28	92%
Blast2go	cortical microtubule cytoskeleton	GO:0030981	Cellular Component	1.11352e-28	92%
Blast2go	phragmoplast	GO:0009524	Cellular Component	1.11352e-28	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5N749

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 147 aas, your sequence is shorter than subject: 122 - 1997

Fln protein: LNTLATAYKILGEDIWRFVGKLTDAQKSMLDDKFKWKAREMDKRKEGKPGEARASLRRSVRDNGLEIGDKQTCTIGLYELYRITQLYPQVDIFSQLQNASEAFRTYIRDGLAQMEKKCSCW*

Protein Length: 123

Fln nts: CTAAATACATTGGCAACTGCTTACAAGATTCTTGGAGAAGATATTTGGAGATTTGTTGGAAAGCTAACAGATGCTCAGAAGAGTATGCTTGATGACAAATTCAAATGGAAAGCTCGTGAAATGGACAAGAGAAAAGAGGGGAAGCCTGGTGAAGCTAGAGCATCTCTGAGGCGCTCTGTTAGAGACAATGGATTAGAGATTGGAGATAAACAAACATGTACAATAGGTTTATATGAACTGTACCGCATCACACAATTATATCCACAGGTAGACATATTTTCTCAACTCCAAAATGCAAGTGAAGCATTTCGCACGTACATCAGAGATGGCCTAGCACAGATGGAAAAAAAATGCAGCTGCTGGTAGAACACCTTCAAGTGT

Fln Alignment:

sp_v1.1_unigene28565___LNTLATAYKILGEDIWRFVGKLTDAQKSMLDDKFKWKAREMDKRKEGKPGEARASLRRSVRDNGLEIGDK
Q5N749_______________LNTLATAYKNLGDDVWRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain