SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28547

Length: 1534 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28547 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	2-oxoglutarate/malate translocator, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RID8_RICCO	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	2-oxoglutarate malate translocator	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	93%
Blast2go	response to nematode	GO:0009624	Biological Process	93%
Blast2go	mitochondrion	GO:0005739	Cellular Component	93%
Blast2go	chloroplast	GO:0009507	Cellular Component	93%
Blast2go	membrane	GO:0016020	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sodium/sulphate symporter	IPR001898	-	0.0	93%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVU0

Fln msg: your sequence is shorter than subject: 423 - 594

Fln protein: PLPLGAVALMGLGAAVLTKTLTFAAAFSAFGDQIPWLIALAFFFARGFIKTGLGNRVAYQFVALFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTERRLGSWLMLTCFQTSVISSAMFLTAMAANPLSVNLAAGAIGQTIGWTDWAVAALVPGLVSLIVVPLLLYVIYPPSVKSSPDAPKLAREKLQKMGPMTKNEIIMSGTLLVTVGLWIFGGMLKVDAVTAAILGLSVLLCTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKVVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFGAMVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFLISIVNIVIWLGLGGVWWKALGLW*

Protein Length: 424

Fln nts: GCCGTTGCCCCTGGGGGCCGTGGCACTGATGGGCCTCGGTGCTGCGGTGCTCACTAAAACCCTAACCTTCGCTGCTGCGTTTTCGGCTTTCGGCGACCAGATTCCATGGCTTATCGCGCTCGCTTTCTTCTTCGCCCGTGGCTTCATCAAGACGGGGCTCGGCAACCGCGTGGCCTACCAGTTCGTGGCTCTTTTCGGGAGCTCGTCATTAGGGTTGGGGTACAGTCTCGTGTTCAGCGAGGCGCTGCTCGCCCCGGCGATCCCTTCCGTCTCCGCCCGCGCCGGTGGCATCTTTTTGCCTCTCGTGAAGTCTCTCTGCGTGGCCTGCGGAAGTAACGTCGGTGACGGGACGGAGCGACGGCTGGGATCGTGGCTCATGCTCACCTGCTTCCAGACGTCCGTGATTTCCTCTGCCATGTTCTTGACGGCCATGGCAGCTAATCCCCTGAGTGTGAATCTTGCCGCAGGCGCCATTGGCCAGACGATCGGGTGGACGGATTGGGCAGTGGCAGCGCTGGTGCCGGGTCTGGTGTCTCTGATCGTTGTTCCGCTTCTTCTTTATGTGATATATCCACCCAGTGTCAAGAGCAGCCCCGATGCGCCGAAGCTCGCGAGGGAAAAGCTGCAGAAGATGGGGCCGATGACCAAGAATGAGATCATCATGAGCGGCACGCTACTGGTCACGGTGGGTCTTTGGATATTTGGGGGAATGCTGAAGGTGGATGCTGTCACTGCAGCGATCCTTGGTTTGTCTGTTCTACTCTGCACAGGCGTTGTGACATGGAAGGAGTGCTTGGCTGAATCAGTAGCGTGGGACACTCTTACATGGTTTGCTGCACTTATTGCAATGGCAGGCTATCTAAACAAATATGGCCTTATTTCATGGTTTAGCCAGACTGTTGTGAAGGTTGTTGGTGGACTTGGTCTGTCATGGCAACTTTCTTTTGGAATATTGGTATTGTTGTACTTTTATTCTCACTACTTCTTTGCAAGTGGTGCAGCACATATTGGGGCAATGTTTACTGCCTTTTTATCCGTCGCAAGTGCTCTAGGGACCCCACCTTTATTTGGGGCAATGGTTCTTTCTTTCCTTTCAAATCTTATGGGAGGCCTTACACATTATGGTATTGGATCAGCACCTGTTTTCTATGGAGCTAACTATGTACCTTTGGCTCAATGGTGGGGTTATGGCTTCCTCATCTCTATAGTGAACATCGTTATTTGGCTTGGACTTGGAGGAGTGTGGTGGAAAGCATTGGGCTTATGGTAA___TTTACTAACTTGTTGAAACTACGAGCCGCACTAAAAAGGAAATAATCAATATTACAAAGGTTAGGAAATCTAGAACATGTCAAAATATCTACGAGTTTGGTCCCAATTTTCAGTTGTTGACTGAGAGCTATTCTTGTGTTTCTCCCATCTAATTCTACGGTGGGTCCGGGCAAAAGGTATTGCAATAATGTTGATTTTGTAACCAGCGAATCATTCTTTTGGGATAAAATATATAGTTTTTACCGTTAGAAAATGTGAAATTCA

Fln Alignment:

sp_v1.1_unigene28547___TKTLTFAAAFSAFGDQIPWLIALAFFFARGFIKTGLGNRVAYQFVAXXXXXXXXXXXXLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTERRLGSWLMLTCFQTSVISSAMFLTAMAANPLSVNLAAGAIGQTIGWTDWAVAAXXXXXXXXXXXXXXXXXXXXXXVKSSPDAPKLAREKLQKMGPMTKNEIIMSGTLLVTVGLWIFGGMLKVDAVTAAILGLSVLLCTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKVVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFGAMVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFLISIVNIVIWLGLGGVWWKALGLW
A9NVU0_______________TKTLTFAAAFSAFGDQIPWLIALAFFFARGFIKTGLGNRVAYQFVALFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTEGRLGSWLMLTCFQTSVISSAMFLTAMAANPLSVNLAASAIGQTIGWTDWAVAALVPGLVSLIVVPLLLYVIYPPSVKSSPDAPKLAREKLQKMGPMTKNEIIMSGTLLVTVGLWIFGGMLKVDAVTAAILGLSVLLCTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKVVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFGAMVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFLISVVNIVIWLGLGGVWWKVLGLW

SNPs (tot: 78)

Position	A %	C %	G %	T %	Probability
430		88		11	0.923564
431	88		11		0.923564
432	11			88	0.923564
433	88		11		0.923564
434	88			11	0.923564
437		11		88	0.923564
438	11			88	0.923564
439			11	88	0.923564
440		11	88		0.923564
441	88	11			0.923564
446	88			11	0.923564
447	88	11			0.923564
449		11	88		0.923564
450	88		11		0.923564
451	88			11	0.923564
452	77	11			0.968132
455	87		12		0.992554
456		87		12	0.992554
457		87	12		0.992554
459		12		87	0.992554
460	12			87	0.992554
464	12	87			0.992554
467	87		12		0.992554
468	87		12		0.992554
470	75	12	12		0.975346
472	75	12			0.975346
474	12		87		0.992554
475		12		87	0.992554
477	14		85		0.993533
478		14	85		0.993533
479	14		85		0.993533
480			14	85	0.993533
483	14	85			0.993533
487	85		14		0.993533
488			85	14	0.993533
492			14	85	0.993533
493	14			85	0.993533
571		80		20	0.995493
725			80	20	0.995493
729		80	20		0.995493
746			20	80	0.995493
747	20	80			0.995493
749			20	80	0.995493
778	10		90		0.90298
903	10			90	0.90298
905			10	90	0.90298
978			85	14	0.993533
979	83		16		0.994512
982	83			16	0.994512
983	83		16		0.994512
984	16		83		0.994512
986	16		83		0.994512
989	83	16			0.994512
993		50		33	1.0
998		66	33		1.0
1000		50	50		1.0
1003	66	33			1.0
1005	83		16		0.994512
1007	40	60			1.0
1008	60		40		1.0
1010	60			40	1.0
1012	40	60			1.0
1015	40		60		1.0
1017	40		60		1.0
1166		90		10	0.90298
1231		87		12	0.992554
1235	87			12	0.992554
1237	12		87		0.992554
1332		75		25	0.996473
1336		75		25	0.996473
1337			25	75	0.996473
1338	25	75			0.996473
1340	25	75			0.996473
1342	75	25			0.996473
1343	75	25			0.996473
1349		75		25	0.996473
1356	33	66			0.997452
1357		33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain