SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28546

Length: 1512 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28546

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	erythroblast macrophage protein emp, putative	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	78%

Source	InterPros	Term	Type	Identity
Blast2go	LisH dimerisation motif	IPR006594	-	78%
Blast2go	CTLH, C-terminal LisH motif	IPR006595	-	78%
Blast2go	CRA domain	IPR013144	-	78%
Blast2go	Ran binding protein, CRA domain	IPR019589	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLC7

Fln msg:

Fln protein: MENETLANGDAVPSIVAPNPPARLNDHLAESLRLEHQLMRVPFEHLKKSMRTSNRTVEKEMNAVMSGVAEAAQRDMSKEEAVQHLNSLVSRLQGLKRKLDESNKSEQLQVQRCRARLDHLSVLRAENQQEWNNIRVKRILVDYMLRLSYYDTAMKLAENSAIQDLVDINVFMDAKKVVECLQNRDCAPALAWCAENKSKLKKVKSKLEFQLRLQEFIELVRVDHSMDAIAYARKHLAPWGSTNMKELQHAMATLAFRSNTDCATYKVLFDAKQWDNLVQQFKEEFCKLYGMTVEPLLNIYLQAGLSALKTQFCYEENCTKEDPLSQESFRNLASDLPFSKHIHSKLVCYISKELMDEDNPPLVLPNGYVYSTKALEEMAKKNNGKVICPRTSQVCEFKDLSKAYIS*

Protein Length: 408

Fln nts: AATGCCTCCGGTTTTTCTACACCGGATGCGCGGACTGTTGATCTCTGCTGATTCACAGTAACCAATTTGGTCCAGGGCAGGCTATCAAGATTCAAG_-_ATGGAAAATGAAACATTAGCAAATGGCGATGCAGTACCCTCAATTGTTGCTCCTAATCCTCCAGCACGTTTAAATGATCATCTGGCAGAGTCATTAAGGCTTGAGCATCAACTAATGAGAGTGCCATTTGAACATCTAAAGAAATCAATGAGGACTAGCAATCGAACTGTTGAGAAAGAGATGAATGCTGTAATGTCAGGTGTTGCAGAAGCAGCACAGAGGGACATGTCAAAAGAAGAGGCTGTTCAACATCTGAATTCTCTTGTTTCACGACTTCAGGGCTTGAAAAGAAAGCTAGATGAGAGCAACAAGAGTGAGCAGTTGCAAGTTCAAAGGTGTCGTGCCAGGTTGGACCATTTGAGTGTGCTTCGGGCAGAAAATCAGCAGGAATGGAACAACATACGAGTGAAGAGGATACTTGTTGACTATATGCTACGCTTATCCTATTATGACACTGCTATGAAACTTGCCGAGAATAGTGCCATACAGGATCTTGTAGATATTAATGTGTTTATGGATGCAAAGAAGGTTGTAGAATGCTTGCAAAATAGGGATTGTGCTCCTGCTCTAGCTTGGTGTGCTGAAAATAAATCTAAGCTGAAGAAGGTTAAGAGCAAGTTAGAGTTCCAGCTCAGGCTGCAAGAGTTTATTGAGCTTGTTCGAGTTGACCATAGCATGGACGCAATTGCATATGCTCGGAAGCATCTTGCACCATGGGGTTCCACCAATATGAAAGAGCTTCAGCATGCAATGGCTACTCTTGCTTTCAGAAGCAATACTGATTGTGCAACATACAAGGTATTATTTGATGCAAAGCAATGGGATAATTTGGTCCAGCAATTCAAGGAGGAGTTCTGCAAACTATATGGAATGACTGTTGAACCACTGCTGAATATTTACCTACAAGCTGGGTTATCTGCTCTTAAGACTCAATTTTGCTACGAGGAAAATTGTACAAAAGAAGACCCACTGTCACAGGAGAGCTTCAGGAATCTGGCTTCAGATTTACCTTTCTCAAAGCATATCCATTCTAAGCTTGTGTGCTACATTTCAAAAGAACTAATGGATGAAGATAATCCACCTTTGGTTTTACCAAATGGTTATGTCTACAGCACTAAGGCTTTGGAGGAAATGGCTAAGAAAAACAATGGAAAAGTGATCTGCCCGAGGACTAGCCAAGTTTGTGAATTCAAAGATCTTAGCAAGGCATACATTTCATAG___AGTTATAATAGAACTTTTATTTGTACATATGCTTTCGAAGGAATTAATCAAGTGCTTCCTTTTTGTTTCATTTAAGATGCGATACAGATGTAATCATTATCATGTATCTGTATCTACCATATCCTGAATTTATTTGGTTGAATTTGTCTTTGATATAAATGCAATCAAGCAATCCAGATTCCAACCTTCTCTCTC

Fln Alignment:

sp_v1.1_unigene28546___MENETLANGDAVPSIVAPNPPARLNDHLAESLRLEHQLMRVPFEHLKKSMRTSNRTVEKEMNAVMSGVAEAAQRDMSKEEAVQHLNSLVSRLQGLKRKLDESNKSEQLQVQRCRARLDHLSVLRAENQQEWNNIRVKRILVDYMLRLSYYDTAMKLAENSAIQDLVDINVFMDAKKVVECLQNRDCAPALAWCAENXXXXXXXXXXXEFQLRLQEFIELVRVDHSMDAIAYARKHLAPWGSTNMKELQHAMATLAFRSNTDCATYKVLFDAKQWDNLVQQFKEEFCKLYGMTVEPLLNIYLQAGLSALKTQFCYEENCTKEDPLSQESFRNLASDLPFSKHIHSKLVCYISKELMDEDNPPLVLPNGYVYSTKALEEMAKKNNGKVICPRTSQVCEFKDLSKAYIS
B8LLC7_______________MENEALANGDAVPATLAPSPPARLNDHLSDSLRLEHQLMKVPFEHLKKSMRTSNRTVEKEMNAVMSGVAEAAQKDMSKEEAVQHLTSLVSRLQGLKRKLDESNKSEQLQVQRCRARLDHLSVLQADNQQEWNNIRVKRILVDYMLRLSYYDTAMKLAESSAIQDLVDINVFMDAKKVVECLQNRDCAPALAWCAENKSKLKKVKSKLEFQLRLQEFIELVRVDHSMDAIAYARKHLAPWGSTNMKELQHAMATLAFRSNTDCATYKVLFDAKQWDNLVQQFKEEFCKLYGMTIEPLLNIYLQAGLSALKTQFCYEENCTKEDPLSQESFQKLASDLPFSKHIHSKLVCYISKELMDADNPPLVLPNGYVYSTKALDEMAKKNNGKVICPRTGIVCDFTDLSKAFIS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1122	95	4			0.999989
1123	3			96	0.984346
1324	92	7			1.0
1427	13	86			1.0
1498			12	87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain