SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28543

Length: 1360 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28543 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Autophagy-related protein 3 n=1 Tax=Picea sitchensis RepID=A9NVL1_PICSI	-	-	92%
FL-Next	sp=Autophagy-related protein 3; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	autophagy 3	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Autophagy-related protein 3	IPR007135	-	0.0	83%
Blast2go	Autophagy-related protein 3, C-terminal	IPR019461	-	0.0	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVL1

Fln msg: your sequence is shorter than subject: 239 - 310

Fln protein: VVTLAVTHFRRASALEEEYEATGGEFLLEDDGWLATHGAPKDDRSEEDNVPSIDALERQERRHIQPISSYFGVDEEEEIPDMAEYEEPDNAVDIDAATLQPPYLVANEPDDDNILHTRTYDVSITYDKYYQTPRVWLTGYDESRMLLRPELVLDDVSQDHARKTVTIEDHPHMSGKHASIHPCRHGAVMKKIIDVLMSNGGEPEVDKYLFLFLKFLASVIPTIEYDYTMDFALGSPQQ*

Protein Length: 240

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCGTAGAGCAAGTGCTTTAGAAGAGGAATATGAGGCTACAGGAGGAGAATTTTTGCTTGAAGATGATGGGTGGTTAGCAACTCATGGTGCACCCAAAGACGATAGGAGCGAGGAGGATAATGTGCCTTCAATTGATGCATTAGAAAGACAGGAGAGGAGACATATACAGCCCATTTCATCCTACTTTGGAGTTGATGAAGAAGAAGAGATTCCCGACATGGCTGAATATGAAGAACCTGATAATGCAGTTGACATTGATGCAGCTACATTACAACCTCCATATTTGGTCGCAAATGAACCGGATGATGACAATATCCTTCATACACGCACATATGACGTGAGCATTACGTATGACAAATATTATCAGACTCCTCGAGTATGGCTTACAGGTTATGATGAGTCGCGGATGCTTTTGCGACCAGAGCTAGTGCTAGATGATGTTAGCCAAGATCATGCTCGCAAAACGGTCACAATTGAGGATCATCCTCACATGTCTGGAAAGCATGCATCTATACACCCTTGTCGTCATGGGGCTGTCATGAAGAAAATAATTGACGTATTGATGTCTAATGGAGGTGAACCAGAAGTTGACAAGTATCTATTTCTCTTCCTGAAATTCTTGGCATCAGTTATTCCTACAATTGAGTATGATTACACTATGGACTTTGCTTTGGGCAGCCCCCAACAATGA___TTGGAAGTAATGTGGAGATGGATTTGGAGATTTGCTTGGGGTTCCCTGCTTGCACAACTTGCTTTATATATTGGACTGGTTAAAGTTAGGGTTAAAGCTGATGTTCAAATAAGCTCTGCAAAAGTGGTGGAGTAAGGGGTTTCTAAAAGCACTGGTACTGGCACTTTTGCTACCAAATACACAGATTGGAATAGCAGGAACAAAAGTGGATATCGTAACTATCCAGTTGAGATGCTAAAGTCAAATGCTACATTACTTCATTTTAAGAGTCTGGAAGTTCGATGTAAATCTAAACTGTAAAGTTGCATTGCTCTATGTCTATAGTTCCGGTGATTCTGTCTGTCTATAGTTCTATCTGCTTTGTCTCTACTCACATTATGGAGGGTGATATTGTTGTATTTTTCACTTTAGTAAACTGAAATATACAGTGACCTATTGCTTGATACTGCATGAAAATTGTAATTATGATTTCTGCATATAAATGTTCATCTTCTGTAAGCTCAAGAAATGTTCTTTGATATAACATGTTTATGTTAAGTAGTGAAATTTATGTTGCTGCATATGCCTATACTTGAGATGCAAGCTTACTTTGCATTCTGAACTGTTCGCTCCTGCGGCTTCTTCTGAGGAAAATACAACTCC

Fln Alignment:

sp_v1.1_unigene28543___VVTLAVTHFRRASALEEEYEATGGEFLLEDDGWLATHGAPKDDRSEEDNVPSIDALERQERRHIQPISSYFGVDEEEEIPDMAEYEEPDNAVDIDAATLQPPYLVANEPDDDNILHTRTYDVSITYDKYYQTPRVWLTGYDESRMLLRPELVLDDVSQDHARKTVTIEDHPHMSGKHASIHPCRHGAVMKKIIDVLMSNGGEPEVDKYLFLFLKFLASVIPTIEYDYTMDFALGSPQQ
A9NVL1_______________LITRNVPCFRRASDLEEEYEAAGGEFLIEDDGWLATHGAPKDDRSEEENVPSIDALERQERRHIHPISSYFGVNDEEEIPDMAEYEEPDNEDDIDAATLQPPYLVANEPDDDNILHTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVLDDVSQDHARKTVTIEDHPHMSGKHASIHPCRHGAVMKKIIDVLMSNGGEPEVDKYLFLFLKFLASVIPTIEYDYTMDFALGSSQQ

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
612	66	33			0.997452
716	85		14		0.993533
1009		16		83	0.999991
1010		16	83		0.999991
1011		16		83	0.999991
1205	33		66		1.0
1257	14	85			0.993533
1258		14		85	0.993533
1260	85		14		0.993533
1265	14	85			0.993533
1266		85	14		0.993533
1267	85		14		0.993533
1273			14	85	0.993533
1274	14			85	0.993533
1276	85		14		0.993533
1307			25	75	0.996473
1308	25	75			0.996473
1309		75	25		0.996473
1314	25			75	0.996473
1315			25	75	0.996473
1317		25		75	0.996473
1320	75		25		0.996473
1327	25			75	0.996473
1328		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain