SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28542

Length: 1490 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28542 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	replication factor C / DNA polymerase III gamma-tau subunit, putative (EC:2.7.7.7); K10755 replication factor C subunit 2/4	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	replication factor c dna polymerase iii gamma-tau	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	86%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	86%
Blast2go	ATPase, AAA-type, core	IPR003959	-	86%
Blast2go	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	IPR008921	-	86%
Blast2go	Replication factor C, C-terminal domain	IPR013748	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSN9

Fln msg:

Fln protein: MAPIHASSQQWVEKYRPKQVKDVAHQEEVVRALTNTLDTGNLPHLLFYGPPGTGKTTTALAIAHQLFGPEYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIIILDEADSMTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVQDIMTDRILHICKEEGVHLDSDALKMLSSISEGDLRRAITYLQSAARLYGSSISSTNLISVSGIVPKEVVQSLFQACRTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVEATDISDETKARISQRLAEADKCLIDGADEYLQLLDVASNAMRSLCNMTQECCY*

Protein Length: 341

Fln nts: ATTGGGGATCATGCAGCGGAGTTTGGGTAACCTTAGTTTAGTTTTATTCTGTTTTTTCCAGTTAAACACAAGGCGGGAAGCCTGATGCCTCTATTATGAACAGGAGTTGTATTCCCAAGATTTAAGTAGGGCATCATCGAGATTTCGCAACAAAAA_-_ATGGCTCCAATTCACGCTAGTTCTCAGCAATGGGTGGAGAAGTATAGGCCGAAGCAGGTAAAAGATGTTGCCCATCAGGAAGAAGTTGTGAGGGCACTTACGAACACACTCGATACTGGCAATCTGCCACATTTGCTTTTCTATGGCCCTCCAGGGACAGGGAAAACTACTACAGCTCTTGCAATCGCACACCAGCTTTTCGGGCCTGAATACAAATCAAGAGTCTTAGAGCTTAATGCAAGTGATGATCGTGGTATTAATGTTGTACGCACAAAGATAAAGGATTTTGCAGCAGTTGCAGTAGGTTCTGGAAATACGAACAGTGGTTATCTTTGTCCACCTTTCAAAATCATCATCTTAGATGAGGCAGATTCTATGACAGAAGATGCCCAGAATGCCTTGCGTCGTACGATGGAGACATACTCCAAAGTTACAAGGTTTTGTTTTATTTGCAACTATGTTAGCAGGATTATTGAGCCGCTTGCTTCCAGATGTGCAAAGTTTAGGTTCAAACCACTTGTTCAAGACATTATGACTGATCGAATACTACATATTTGTAAAGAGGAAGGAGTTCATCTTGATTCAGATGCCTTGAAAATGTTGAGTTCTATTTCTGAAGGCGATCTTCGACGAGCTATCACATATTTGCAAAGTGCTGCTCGCTTGTATGGATCATCCATTTCCAGCACCAACCTCATTAGTGTTTCAGGGATAGTACCAAAGGAGGTGGTCCAATCATTGTTTCAAGCATGCAGAACTGGCCAATTTGATTTGGCACAGAAGGAAGTTTCAGACATCATAGCTGAGGGACATCCAGCATCCCAAATCTTTTCTCAGTTGTACGACATGGTAGTTGAAGCTACAGATATTTCTGATGAGACAAAGGCTCGAATAAGCCAGAGATTAGCTGAGGCTGATAAGTGCCTTATTGACGGAGCTGATGAATACTTGCAGCTGCTTGATGTAGCCAGCAATGCAATGCGTTCTTTGTGTAATATGACCCAAGAATGTTGTTACTGA___TCTGAAATTCACTTGACTTAATAGCTGACTAATGAGTTTGTTCTCTGCTAACAATTCATGGTGACTAGTGGATAGAGTGATGAATACTTGCAGGTACTGGATGCAGAAAGCAGTATGATGCATGCCTTCATACCATGTTTCAAGAATATTTTCTTTAAACGTATTCAAACATTAACCAGATAACTGTATAGAGCTCGATGTTTCAGTTAAAGTTAGTGACTAGTCCCATAATGTTTTTAAATGCACATAACAGGAGGCTGTATTCTAATTTTCATAATTTCCAGTGTCCATTATTTTGCACTTTAAGAAAAAAA

Fln Alignment:

sp_v1.1_unigene28542___MAPIHASSQQWVEKYRPKQVKDVAHQEEVVRALTNTLDTGNLPHLLFYGPPGTGKTTTALAIAHQLFGPEYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIIILDEADSMTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVQDIMTDRILHICKEEGVHLDSDALKMLSSISEGDLRRAITYLQSAARLYGXXXXXXXXXXXSGIVPKEVVQSLFQACRTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVEATDISDETKARISQRLAEADKCLIDGADEYLQLLDVASNAMRSLCNMTQECCY
A9NSN9_______________MAPIHSSSQQWVEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTALAIAHQLFGPEYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIIILDEADSMTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEEGVHLDSDALTMLSSISEGDLRRAITYLQSAARLYGSSISSNNLISVSGIVPKEVVQSLYQACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQATDISDETKARISQRLAEADKCLIDGADEYLQLLDVASNAMRSLCNMTQECCY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
473	33		60	6	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain