SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28538

Length: 2060 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28538
CTGCCTTCAAGGATTCCAATCGCTGGCGCAATTGCTGAGAACCTTTATTTTTTTGAGGCGGTAAATATTTCTTCCAGACCTTTTAAATGCTCGTTGGCTCTCCATCCTGGGGACTGTTATCGGTTGCCATAACCTCGTTTCCACTGTTACTGGCTGCCATACCATCGTTTGGTGGACTACAACTGCCTGTCGTCTAGGGTTTTGTGTGGGAAATTAGCAGGGTTCTGTGGAAACACAATCTGAGTTTTTCGTTCTGTACAGAGAAGATGGTGAAGGAAGGAGCTATTGGTCAGTTTGAGGTCGAGGTTGAGGGATGGGCGGCCAGGGATGACTCTGGCATTCTCTCGCCCATTAACTTTACTCGCAGGAAAACTGGATCCAATGACGTAACTTTCAAGGTCGAATACTGTGGAATTTGTCACTCTGATTTGCACCAAATTCGGAACGAATGGAAAAATTCGATATACCCAATGGTTCCAGGGCACGAAATTGTAGGGTGTGTAACTGAAGTGGGGTCAGAAGTGAAGAATTTCGCTGTTGGAGATCGCGTGGGGGTGGGCTGCATGGTTTGGAGCTGCCACCAATGTGATTCCTGTAGCGAAGGGCAAGAACAGTATTGTGAGAAGATGGTTTTGACATATAACGCCATTAATGTGGACGGGTCTCCCACTTATGGAGGTTATTCATCCTTGATGGTCTGTGACCAAAGTTTTGTAGTGAAGATTCCAGAGACTCTGCCGTTTGATGCAGCAGCCCCATTGCTCTGTGCGGGAATAACTGTATACAGCCCCATGAAATACCTCCAGATGTCTCAGCCTGGTAAAAGCCTTGGCGTTGTGGGGCTTGGCGGTTTGGGACACATGGCTGTGAAAATTGGAAAAGCTTTAGGACTGAAAGTAACGGTAATCAGTACATCGGCTAGGAAGGAAAAAGAAGCCAGAGAGGATTTGGGGGCAGACCACTTCATCATCAGCAAAGATCCGAAACAGATGGAGGATGCGGCCAAGTCCCTGGATTACATAATTGACACAGTCTCTGCTGACCATCCTTTGCAGCCTCTCCTCAATTTATTGAAAGTGAATGGGAAACTGGTTTTGGTTGGTCTGCCAGAAAATCCTCTTTCTTTTCATCCTGCAGGCGTCATATCTGGTCGGCGATTTGTAGGGGGCAGTTCGATTGGAGGAATAAAGGAAACGCAAGAGATGTTGGACTTCTGTGCAGAGCATAACATCTCGTGCATGATTGAAAACATTCCAATCGACTACGTGAATACAGCAATGGAACGATTAGTGAAGGGAGATGTGAAGTACCGTTTTGTAATCAACGTTGCTGAAAGCTTTTCTGGTGCAAACTGAGTGAGATTTAAATGATGCTATTATTTCTGGTGATAGCCAAATATAATAGGTTGGGCGTGTTTAAAGAGTCGAGTTACAGTTGTCATTGTAACAGATAGTAGACTAGTTAAAAGAAAAATGAAGCGAGGGAAAATATTGTGGAATCCAAGCTAATTTTTGCAGTCATGGTGAAGGCTTTTGTATTTACATTTCTCTGAAACAAAATTTACAATATATGTTTTTAATACTTTTAAGGGTTCTGATAGTTTCAACACTATGCAAATGGGATTTATAATTTGATATTTGAGCTTCAGCCATGGAATTGCAGTAGCACCAACCAGTTTTCAATTTTTCTTGCCATGAATGGTAGCAGAACCAGTCTTTTTCTCAGTTTTATCACTATTACAGATGATGGCAGGAACTAGTTGGAACTTCACCTTTGGGCGGGCATGGCACAGGCGCAGGTGCCGGATGTGGGTGTTACCTGTCGCTATCTATGTGGCTTACATATCGTACACATTCAGCTTTTTTGGTTGTAAAATCACTTTCACCGATCGTTGGGCAGCAAGTATGCGAGTCAATAAAGTGACGCGAGTCATCTTCAACATTTATTGTACTTTTTTGTAGTTGATGATAAGTTTGACCACTTTCGAACTAGAGTTATCTTTCGCTTCCCAGATAAGAAGTGGTAGTTTTATGATTAATTAACAGATGATAAAAATAGCT

Ace file of the UniGene sp_v1.1_unigene28538

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CADL8; cinnamyl alcohol dehydrogenase-like protein	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	sinapyl alcohol dehydrogenase	-	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS97

Fln msg:

Fln protein: MVKEGAIGQFEVEVEGWAARDDSGILSPINFTRRKTGSNDVTFKVEYCGICHSDLHQIRNEWKNSIYPMVPGHEIVGCVTEVGSEVKNFAVGDRVGVGCMVWSCHQCDSCSEGQEQYCEKMVLTYNAINVDGSPTYGGYSSLMVCDQSFVVKIPETLPFDAAAPLLCAGITVYSPMKYLQMSQPGKSLGVVGLGGLGHMAVKIGKALGLKVTVISTSARKEKEAREDLGADHFIISKDPKQMEDAAKSLDYIIDTVSADHPLQPLLNLLKVNGKLVLVGLPENPLSFHPAGVISGRRFVGGSSIGGIKETQEMLDFCAEHNISCMIENIPIDYVNTAMERLVKGDVKYRFVINVAESFSGAN*

Protein Length: 364

Fln nts: CTGCCTTCAAGGATTCCAATCGCTGGCGCAATTGCTGAGAACCTTTATTTTTTTGAGGCGGTAAATATTTCTTCCAGACCTTTTAAATGCTCGTTGGCTCTCCATCCTGGGGACTGTTATCGGTTGCCATAACCTCGTTTCCACTGTTACTGGCTGCCATACCATCGTTTGGTGGACTACAACTGCCTGTCGTCTAGGGTTTTGTGTGGGAAATTAGCAGGGTTCTGTGGAAACACAATCTGAGTTTTTCGTTCTGTACAGAGAAG_-_ATGGTGAAGGAAGGAGCTATTGGTCAGTTTGAGGTCGAGGTTGAGGGATGGGCGGCCAGGGATGACTCTGGCATTCTCTCGCCCATTAACTTTACTCGCAGGAAAACTGGATCCAATGACGTAACTTTCAAGGTCGAATACTGTGGAATTTGTCACTCTGATTTGCACCAAATTCGGAACGAATGGAAAAATTCGATATACCCAATGGTTCCAGGGCACGAAATTGTAGGGTGTGTAACTGAAGTGGGGTCAGAAGTGAAGAATTTCGCTGTTGGAGATCGCGTGGGGGTGGGCTGCATGGTTTGGAGCTGCCACCAATGTGATTCCTGTAGCGAAGGGCAAGAACAGTATTGTGAGAAGATGGTTTTGACATATAACGCCATTAATGTGGACGGGTCTCCCACTTATGGAGGTTATTCATCCTTGATGGTCTGTGACCAAAGTTTTGTAGTGAAGATTCCAGAGACTCTGCCGTTTGATGCAGCAGCCCCATTGCTCTGTGCGGGAATAACTGTATACAGCCCCATGAAATACCTCCAGATGTCTCAGCCTGGTAAAAGCCTTGGCGTTGTGGGGCTTGGCGGTTTGGGACACATGGCTGTGAAAATTGGAAAAGCTTTAGGACTGAAAGTAACGGTAATCAGTACATCGGCTAGGAAGGAAAAAGAAGCCAGAGAGGATTTGGGGGCAGACCACTTCATCATCAGCAAAGATCCGAAACAGATGGAGGATGCGGCCAAGTCCCTGGATTACATAATTGACACAGTCTCTGCTGACCATCCTTTGCAGCCTCTCCTCAATTTATTGAAAGTGAATGGGAAACTGGTTTTGGTTGGTCTGCCAGAAAATCCTCTTTCTTTTCATCCTGCAGGCGTCATATCTGGTCGGCGATTTGTAGGGGGCAGTTCGATTGGAGGAATAAAGGAAACGCAAGAGATGTTGGACTTCTGTGCAGAGCATAACATCTCGTGCATGATTGAAAACATTCCAATCGACTACGTGAATACAGCAATGGAACGATTAGTGAAGGGAGATGTGAAGTACCGTTTTGTAATCAACGTTGCTGAAAGCTTTTCTGGTGCAAACTGA___GTGAGATTTAAATGATGCTATTATTTCTGGTGATAGCCAAATATAATAGGTTGGGCGTGTTTAAAGAGTCGAGTTACAGTTGTCATTGTAACAGATAGTAGACTAGTTAAAAGAAAAATGAAGCGAGGGAAAATATTGTGGAATCCAAGCTAATTTTTGCAGTCATGGTGAAGGCTTTTGTATTTACATTTCTCTGAAACAAAATTTACAATATATGTTTTTAATACTTTTAAGGGTTCTGATAGTTTCAACACTATGCAAATGGGATTTATAATTTGATATTTGAGCTTCAGCCATGGAATTGCAGTAGCACCAACCAGTTTTCAATTTTTCTTGCCATGAATGGTAGCAGAACCAGTCTTTTTCTCAGTTTTATCACTATTACAGATGATGGCAGGAACTAGTTGGAACTTCACCTTTGGGCGGGCATGGCACAGGCGCAGGTGCCGGATGTGGGTGTTACCTGTCGCTATCTATGTGGCTTACATATCGTACACATTCAGCTTTTTTGGTTGTAAAATCACTTTCACCGATCGTTGGGCAGCAAGTATGCGAGTCAATAAAGTGACGCGAGTCATCTTCAACATTTATTGTACTTTTTTGTAGTTGATGATAAGTTTGACCACTTTCGAACTAGAGTTATCTTTCGCTTCCCAGATAAGAAGTGGTAGTTTTATGATTAATTAACAGATGATAAAAATAGCT

Fln Alignment:

sp_v1.1_unigene28538___MVKEGAIGQFEVEVEGWAARDDSGILSPINFTRRKTGSNDVTFKVEYCGICHSDLHQIRNEWKNSIYPMVPGHEIVGCVTEVGSEVKNFAVGDRVGVGCMVWSCHQCDSCSEGQEQYCEKMVLTYNAINVDGSPTYGGYSSLMVCDQSFVVKIPETLPFDAAAPLLCAGITVYSPMKYLQMSQPGKSXXXXXXXXXXHMAVKIGKALGLKVTVISTSARKEKEAREDLGADHFIISKDPKQMEDAAKSLDYIIDTVSADHPLQPXXXXXXXXXXXXXXXXPENPLSFHPAGVISGRRFVGGSSIGGIKETQEMLDFCAEHNISCMIENIPIDYVNTAMERLVKGDVKYRFVINVAESFS
C0PS97_______________MVNEGELSRFEVEVEGWAARDDSGILSPINFTRRKTGSNDVTFKVAYCGICHSDLHQIRNEWKNSMYPMVPGHEIVGLVTEVGSEVKKFAVGDRVGVGCMVWSCQQCDSCSEGQEQYCDKTVLTYNAINADGSPTFGGYSSLMVCNQRFVVKIPETLPFDAAAPLLCAGITVYSPMKYLQMTEPGKSLGVVGLGGLGHMAVKLGKAFGLRVTVISTSPKKEKEAREVLGADHFIISKDQKQMQDAAKSLDYIIDTVSADHPIQPLISLLKVQGKLVLVGLPENPIYFHPAAVISGRRFVGGSSIGGVKETQEMLDFCAEHNISCMIENIPIDYVNTAMERLGKGDVKYRFVINVAESYS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
724	20		80		0.999996
839		17		82	1.0
1032	85		14		0.993533
1041	14			85	0.993533
1062	66	33			1.0
1071	80		20		0.995493
1108	33	66			1.0
1109	33	66			1.0
1111	33		66		1.0
1112	33			66	1.0
1113	33	66			1.0
1115	33	66			1.0
1120		33	33		0.997753
1174			20	80	0.995493
1197	60		40		1.0
1440		18		81	0.999994
1515			52	31	1.0
1532	50			50	1.0
1542	40		60		1.0
1566	40			60	1.0
1567	40	60			1.0
1587			33	66	1.0
1716	33	66			0.997452
1975			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain