SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28531

Length: 412 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene28531
ATACTCAGGCTACAGGAAAGACTGTTATCTTATCTGAACAGCAGTTGATTGACTGTGCTGGAGGATTTAACAACTTTGGCTGCAATGGTGGTCTGCCATCTCAAGCATTTGAGTATATTAAGTACAATGGAGGGCTTGACACTGAGGAAGCTTATCCTTACACAGCTCAAGATGGTGTTTGTAAATATGATGCAAACAAGATCGGTGTAAAGGTTACTGACAGTGTCAACATAAGTTTGGGGGCAGAAGATGAACTCAAGGCTGCAGTGGGTCTGGTTCGCCCAGTCAGTATCGCATTCGAAGTTATTCAGGACTTTCGATTTTACAAGGATGGGGTTTTCACTAGTGAAACTTGTGGTCAAGGTCCATCGGATGTCAACCACGCTGTTTTGGCCGTTGGGTATGGTGTTAG

Ace file of the UniGene sp_v1.1_unigene28531

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thiol protease aleurain-like n=2 Tax=Arabidopsis thaliana RepID=ALEUL_ARATH	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	oryzain gamma chain precursor	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	85%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase, cysteine peptidase active site	IPR000169	-	85%
Blast2go	Peptidase C1A, papain C-terminal	IPR000668	-	85%
Blast2go	Peptidase C1A, papain	IPR013128	-	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLD7

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 136 - 357

Fln protein: TQATGKTVILSEQQLIDCAGGFNNFGCNGGLPSQAFEYIKYNGGLDTEEAYPYTAQDGVCKYDANKIGVKVTDSVNISLGAEDELKAAVGLVRPVSIAFEVIQDFRFYKDGVFTSETCGQGPSDVNHAVLAVGYGV

Protein Length: 137

Fln nts: ATACTCAGGCTACAGGAAAGACTGTTATCTTATCTGAACAGCAGTTGATTGACTGTGCTGGAGGATTTAACAACTTTGGCTGCAATGGTGGTCTGCCATCTCAAGCATTTGAGTATATTAAGTACAATGGAGGGCTTGACACTGAGGAAGCTTATCCTTACACAGCTCAAGATGGTGTTTGTAAATATGATGCAAACAAGATCGGTGTAAAGGTTACTGACAGTGTCAACATAAGTTTGGGGGCAGAAGATGAACTCAAGGCTGCAGTGGGTCTGGTTCGCCCAGTCAGTATCGCATTCGAAGTTATTCAGGACTTTCGATTTTACAAGGATGGGGTTTTCACTAGTGAAACTTGTGGTCAAGGTCCATCGGATGTCAACCACGCTGTTTTGGCCGTTGGGTATGGTGTTAG

Fln Alignment:

sp_v1.1_unigene28531___TQATGKTVILSEQQLIDCAXXXXXXXXXXXLPSQAFEYIKYNGGLDTEEAYPYTAQDGVCKYDANKIGVKVTDSVNISLGAEDELKAAVGLVRPVSIAFEVIQDFRFYKDGVFTSETCGQGPSDVNHAVLAVGYGV
A9NLD7_______________TQATGKTVILSEQQLVDCAGAFNNFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTAKDGVCNYDVNNVGVKVADSVNISLGAEDELKSAVGLVRPVSVAFQVIQDFRFYKEGVFTSTTCGQGPMDVNHAVLAVGYGV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain