SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28498

Length: 1366 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28498

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	seven in absentia-like protein [Arabidopsis thaliana]	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ubiquitin ligase	-	-	96%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	96%
Blast2go	Seven-in-absentia protein, sina	IPR004162	-	96%
Blast2go	TRAF-like	IPR008974	-	96%
Blast2go	Zinc finger, SIAH-type	IPR013010	-	96%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	96%
Blast2go	TRAF-type	IPR013322	-	96%
Blast2go	Seven In Absentia Homolog-type	IPR013323	-	96%
Blast2go	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	96%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX30

Fln msg: your sequence is shorter than subject: 291 - 323

Fln protein: QLPTKPPNNISSNNNNPNNNNNNSNNGTISPAASSVHELLECPVCTNSMYPPIHQCHNGHTLCSSCKSRVHNKCPTCRQELGDIRCLALEKVAESLELPCKHYNLGCPEIFPYYSKLKHEALCSFRPYNCPYAGSECSVAGDIQSLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKNFSYSLEVGANGRKMIWQGVPRSIRDSHRKVRESHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ*

Protein Length: 292

Fln nts: CAGCTACCCACGAAACCCCCGAACAACATCTCGAGCAACAATAACAATCCCAATAACAACAACAATAATAGCAACAATGGGACCATTTCACCCGCTGCGAGCAGCGTCCATGAGCTCCTCGAATGCCCCGTCTGCACAAATTCCATGTACCCTCCTATTCACCAGTGTCATAATGGGCATACGCTATGTTCGAGCTGTAAGTCAAGAGTTCATAACAAGTGCCCTACTTGCAGACAAGAGCTTGGAGACATAAGGTGCTTAGCCTTGGAGAAAGTGGCAGAATCTCTTGAGTTACCTTGCAAGCATTACAATCTTGGATGCCCGGAAATTTTTCCCTACTACAGCAAACTTAAACACGAGGCCCTATGCTCTTTCAGACCATACAACTGCCCCTATGCAGGATCGGAATGTTCTGTCGCAGGTGATATTCAGTCTCTCGTGGCACATCTAAGGGATGATCACAAAGTTGACATGCACACAGGTTGTACTTTTAATCACCGCTATGTAAAATCCAATCCACGTGAAGTTGAAAATGCCACCTGGATGTTGACAGTCTTCCACTGTTTTGGACAGTACTTTTGTCTTCACTTTGAAGCCTTTCAATTAGGTATGGCGCCGGTATATATGGCTTTTTTGCGTTTTATGGGAGATGACAATGAAGCAAAGAATTTCAGCTATAGCCTTGAAGTTGGGGCCAATGGAAGAAAAATGATCTGGCAAGGAGTGCCAAGAAGCATCCGGGACAGTCATCGGAAAGTCCGCGAGAGCCATGATGGGTTAATTATCCAGAGAAACATGGCATTGTTCTTTTCAGGTGGAGATAGGAAAGAGTTGAAGCTAAGAGTCACTGGGCGAATCTGGAAAGAACAGTGA___AGCATAAGCTTTCTCGCTTTTAGCTGGGGTATTAAGAAAAACGTAGGTTATTTCTAGATAATAATCCCTTCAGAAACATCATTCGAATTATTTTGTAAAGCAGCAAGTTTACTTAGGATTGGCTTAAAAAGATAAAGATAATTTCTGCATGTTGGAAGCAGATTTTGTTCAGGTAAGTGCAGACCAGGTAATATCACGTTGTATTCTTGAGATTTTCTATGCCTACTATCCTATTTCTATTACAATATGATGGGTGGGTGTCATGGCCTTTGTTTTCAGATTTATGGCATTACTGAATATTGCCATTGTTTATTGAATTCTGACATCTGTATAGCTCGATTCTCCTCAATGGCCAGTAGCCTGCAAACCCACACGGTCAGGGGCTAGAATCATGTAAAGTTGGTTTGTTATTTTGTTGGGGACTGAAAAAGCTTCACACGTGATTTACTTGTTCTCACTCTTTTATATCGGTAACAAATAAATGACAGGCCCC

Fln Alignment:

sp_v1.1_unigene28498___QLPTKXXXXXXXXXXXXXXXXXXXXXGTISPAASSVHELLECPVCTNSMYPPIHQCHNGHTLCSSCKSRVHNKCPTCRQELGDIRCLALEKVAESLELPCKHYNLGCPEIFPYYSKLKHEALCSFRPYNCPYAGSECSVAGDIQSLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKNFSYSLEVGANGRKMIWQGVPRSIRDSHRKVRESHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ
A9NX30_______________QLPTKPPNNITSNNNNPNNNTNNSNNGTISPAASSVHELLECPVCTNSMYPPIHQCHNGHTLCSSCKSRVHNKCPTCRQELGDIRCLALEKVAESLELPCKHYNLGCPEIFPYYSKLKHEALCTFRPYNCPYAGSECSVTGDIQSLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKNFSYSLEVGANGRKMIWQGVPRSIRDSHRKVRESHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
135		40		60	1.0
137		80	20		0.995493
139	80	20			0.995493
140	80	20			0.995493
143		80	20		0.995493
144		80	20		0.995493
145	80	20			0.995493
151	20	80			0.995493
155	20	80			0.995493
779			10	90	0.90298
979	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain