SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28497

Length: 1291 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28497

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	38%
Blast2go	protein prenyltransferase	-	-	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein prenyltransferase, alpha subunit	IPR002088	-	0.0	56%
Blast2go	Protein prenyltransferase	IPR008940	-	0.0	56%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9I5P0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 35 aas, putative chimeric sequence, your sequence is shorter than subject: 376 - 434

Fln protein: PLFKAAKSAYLFSYRQYKILGDLSQNEDCSPYVCESGSSSETLREHRSTMDLHSVEAALLKHSKVVVILSCDYASAWNSRKQVISQKAINEVYGAELQLSALVLSYAPKSEQAWSYRRWLIRLIINVSAKSKEPLMVLERESDFLERIAEKSRMNYRAWRHRCWLVNHMSTQQVLTELLRTKRWAQLHVGDNCCFHYRRCLLLHLCRSKSSTTKENKVFSTEDFNGIFQNDTKEDWDEPFMIWKDELDWNKYLIKYYIGREALWIHRRFIFHQLIQQPRSHYSETSSTIDSDISPKKEAPTDGYSYQQLHAFLDEEFELIDMCFNVPDTGFEDTTQQKEYAAMYKMWMIMQLQWINGSKELLERIEKNDAISRLC*

Protein Length: 377

Fln nts: CCTCTATTTAAGGCTGCAAAATCTGCTTACCTGTTTTCGTACAGGCAGTATAAAATCCTTGGTGACTTATCACAAAATGAAGATTGTTCGCCATATGTATGTGAATCAGGAAGTTCATCAGAAACTCTCAGAGAGCATAGAAGTACAATGGATTTACACTCTGTAGAAGCTGCACTTTTGAAGCACAGCAAAGTTGTTGTGATATTAAGCTGTGACTATGCTAGTGCTTGGAATTCCAGGAAACAGGTTATATCACAAAAAGCAATCAACGAAGTTTATGGGGCAGAGCTTCAGTTGTCAGCACTTGTTCTTTCCTATGCTCCAAAGAGTGAGCAAGCTTGGTCTTATCGGCGTTGGTTGATAAGATTGATCATCAATGTCAGTGCAAAATCTAAGGAACCTCTCATGGTTTTAGAAAGAGAATCAGATTTTTTAGAGCGTATTGCTGAGAAATCACGGATGAATTACCGGGCTTGGCGCCATCGTTGTTGGCTTGTGAACCATATGTCAACTCAACAAGTATTGACAGAATTGCTTAGAACGAAAAGATGGGCACAATTACATGTAGGAGACAATTGTTGTTTTCACTATCGTAGATGCTTATTGCTACATCTGTGTCGAAGCAAAAGTTCTACTACTAAAGAAAACAAAGTCTTTTCTACAGAAGATTTTAATGGAATTTTCCAGAATGATACAAAGGAAGATTGGGATGAACCTTTCATGATTTGGAAGGATGAGCTTGATTGGAACAAATATTTGATCAAATATTATATCGGCCGAGAGGCTCTTTGGATTCACCGCCGTTTCATATTTCATCAATTGATACAGCAGCCTAGATCTCACTACAGTGAAACATCATCTACAATAGACTCTGATATCAGTCCTAAGAAAGAAGCTCCTACAGATGGCTACAGTTACCAACAATTACATGCTTTTCTGGATGAAGAGTTTGAGCTTATTGACATGTGTTTCAATGTGCCCGACACTGGCTTTGAAGATACGACCCAGCAGAAAGAGTATGCGGCCATGTACAAGATGTGGATGATCATGCAATTGCAATGGATTAATGGAAGCAAGGAATTGTTGGAAAGGATTGAAAAGAACGATGCAATCTCAAGGCTATGCTAG___AAAAGGTCTGCCCACAAAGAGCTGTTGTCTGGGAAGGATTATTATGTCTGAATCAATGTTCATATGTTGAGCCTCATTGAATTAGATAAATTATTTACATAATGCTATTGTATCATAATATCATTTACAAGTAGAGTTGAGAAATAAAAGTTATGCAGATATT

Fln Alignment:

sp_v1.1_unigene28497___PLFKAAKSAYLFSYRQYKILGDLSQNEDCSPYVCESGSSSETLREHRSTMDLHSVEAALLKHSKVVVILSCDYASAWNSRKQVISQKAINEVYGAELQLSALVLSYAPKSEQAWSYRRWLIRLIINVSAKSKEPLMVLERESDFLERIAEKSRMNYRAWRHRCWLVNHMSTQQVLTELLRTKRWAQLHVGDNXXXXXXXXXXXXXXXSKSSTTKENKVFSTEDFNGIFQNDTKEDWDEPFMIWKDELDWNKYLIKYYIGREALWIHRRFIFHQLIQQPRSHYSEXXXXXXXXXXPKKEAPTDGYSYQQLHAFLDEEFELIDMCFNVPDTGFEDTTQQKEYAAMYKMWM
B9I5P0_______________PLYKAVKDVFMHAISQYKRHENLSD----------------------ASWDEGNLESEVMKHSKALLLLSCDFGTAWNFRKLIVSKKQHMLIFLDELFLSALVLSYSPKSEKAWCHRRWVIKM---VAGKCSTMQDIVGKESELVEKIAERSKMNYRAWNHRCWLVSYMTTEQVLHELKKSRNWAGLHVADNSCFHYRTRLMLRI---------------REDHCHKLEDGTSDGNDEIYRIWQEELDWNEALIKCYVGREALWLHRRFLSLSWIR----HFTTNLGDTSNYRVCKSRINAD------IGIFMDNELHLANSCSTIPDNEFEDFQAQALYSATYILWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain