SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28489

Length: 1297 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28489 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_34.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SZU8_VITVI	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	sag18 (senescence associated gene 18)	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	senescence	GO:0010149	Biological Process	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ceramidase	IPR008901	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8N4

Fln msg: Overlapping hits, possible frame ERROR between 614 and 598, and possible frame ERROR between 963 and 974,

Fln protein: MMTLAQIKDSRACVWLVALFCFIALMIVTPVIPQSQEYHNFADQRNFFGVPNTLNVISNFPFLIIGVVGLILCLYGNHFSLSFQGEVWGWVFFYIGVTATAFGSAYYHLKPDDARLVWDRLPMTIAFTSIMAVFIIERIDENTxxxxxxxPLLMAGIVSIAYWRYFDDLRPYALVQFIPCIAIPAMTILLPAMYTHSIYWLWAAGFYLLAKLEEAADKPIYKCTHYTISGHSLKHLCAAMVPVFLTIMLSRRCIEIERQSLFEMWxxxxFRQFQLMKKTDEDGLSGSIQG*

Protein Length: 292

Fln nts: GACAAGTAACGATATATCCCCATTCTACCGCTGCATGCTCTCATACCCCCAGCCCCTGTAACGAAGAAACACACAGGGTTGAATATTACCCAACAATTATATATATATAAATAATACACAGGCAAAAGAATACCTAACCTGGCATATACTGAATTGAAAATCAATCA_-_ATGATGACGCTGGCGCAAATTAAGGATAGCAGGGCTTGTGTGTGGTTGGTTGCCTTGTTCTGTTTCATTGCGCTGATGATTGTGACGCCTGTCATTCCACAGTCCCAGGAGTATCACAATTTTGCAGACCAACGCAACTTTTTCGGGGTGCCCAATACCTTGAATGTGATATCAAACTTCCCCTTTTTGATTATTGGTGTTGTTGGACTGATACTATGCCTTTACGGAAATCATTTCAGTCTAAGTTTCCAAGGAGAGGTGTGGGGTTGGGTTTTCTTTTATATAGGAGTTACTGCAACTGCTTTTGGCTCTGCTTATTATCATCTCAAACCAGATGATGCACGACTTGTATGGGATCGTTTACCTATGACTATTGCATTCACTTCAATCATGGCTGTCTTCATCATTGAGAGGATTGATGAAAATACAxxxxxxxxxxxxxxxxxxxxxCCTCTTCTTATGGCGGGCATTGTCAGCATTGCTTACTGGAGGTATTTTGATGACCTTAGGCCCTATGCTCTGGTCCAGTTTATTCCATGTATTGCGATTCCAGCAATGACTATTTTACTGCCAGCGATGTATACACATTCTATATACTGGTTATGGGCAGCAGGATTTTATCTCTTGGCTAAACTGGAAGAGGCAGCAGATAAGCCAATTTACAAATGTACTCATTACACCATAAGTGGCCATTCTTTGAAGCACCTGTGTGCTGCGATGGTTCCTGTTTTCCTTACAATCATGTTGTCTCGTAGGTGCATTGAAATTGAGAGGCAAAGCTTGTTTGAGATGTGGxxxxxxxxxxxxTTCAGACAGTTTCAGTTGATGAAGAAGACAGACGAGGATGGTTTAAGTGGAAGTATTCAAGGCTAA___CAACACAAGCAGAAGGTCCAGATCGACCAACTTCTTTGTGAAAGCCTAAAGGCTATTCTATGGTGTTTACTTCACCAATAGAACAACACTCATCATGTATGATACTGCAATTCTCACTGTTGGAGGGACTTTGTGAAGAATCACGAAACTTTAAAGTACGTACTTCAAAATTGTATATACTTCAGCTCCACGAAAGTATGGATTTCAACTTTCAAGATGTACAATGCTCTTATAATTTCTTTATATACCATCCTCCCAAAA

Fln Alignment:

sp_v1.1_unigene28489___MMTLAQIKDSRACVWLVALFCFIALMIVTPVIPQSQEYHNFADQRNFFGVPNTLNVISNFPFXXXXXXXXXLCLYGNHFSLSFQGEVWGWVFFYIGVTATAFGSAYYHLKPDDARLVWDRLPMTIAFTSIMAVFIIERIDENTxxxxxxPLLMAGIVSIAYWRYFDDLRPYALVQFIPCIAIPAMTILLPAMYTHSIYWLWAAGFYLLAKLEEAADKPIYKCTHYTISGHSLKHLCAAMVPVFLTIMLSRRCIEIERQSLFEMWKxxxxRQFQLMKKTDEDGLSGSIQG
D5A8N4_______________MTTLERIKDSRACVWCVALFCFIALMVVTPVIPQSQEYHNFADRRNFFGVPNTLNVISNFPFLIIGVVGLILCLYGNHFSLSLQGEVWGWVFFYVGVTATAFGSAYYHLKPDDARLVWDRLPMTIAFTSIMAVFIIERIDEKTxxxxxxPLLMAGIVSIAYWRYFDDLRPYALVQFIPCIAIPAMTILLPAMYTHSIYWLWAAGFYLLAKLEEAADKPIYKWTHYTISGHTLKHLCAAMVPVFLTIMLSRRSIEIERQ--FQLMKxxxxRQFQLMKKTDEDGSSGSIQG

SSRs (tot: 1)

Start position	End position	Sequence	Length
1189	1200	TA TA TA TA TA TA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain