SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28448

Length: 1087 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28448 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucosidase 22 n=2 Tax=Oryza sativa RepID=BGL22_ORYSJ	-	-	2.8026e-45	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	bgl22_orysj ame: full=beta-glucosidase 22 short=os5bglu22 flags: precursor	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 1	IPR001360	-	63%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	63%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACM5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 269 - 415

Fln protein: EAAFCLGRLFY*CSVPRRRSGPDLFL*SGQWRKWPFVWSGSFTGTLPSFTKQESEKLRGSFDFIGLVHYTTVYASDAPSYRDLTPRDFLEDMLATISVYRNGIPIGELAPTGIPIVPWGMQALLEYFKGHYANPPLIIYENGYGRSNNESLPLADALNDKPRAAYLHDYLQSLLAAVRNGSNARAYFVWSLVDSFEFLYGYTIRYGLYYVDFKHRDLKRYPNLSVRWYTHFLKRYTDHRPVRSCCYDHDHNNFNVYSFRKEQPLLEAI*

Protein Length: 270

Fln nts: GGAAGCGGCCTTTTGTCTGGGCAGGCTCTTTTATTGATGCTCAGTGCCCCGGCGTAGAAGTGGCCCAGATCTATTTCTGTGAAGTGGGCAATGGAGGAAGTGGCCTTTTGTCTGGTCAGGCTCTTTTACTGGTACATTGCCTTCTTTCACCAAACAGGAATCCGAAAAGCTGAGGGGCTCCTTCGATTTCATTGGTCTCGTCCATTATACTACTGTTTATGCTTCGGATGCTCCTAGTTACAGGGATTTAACCCCAAGAGACTTTCTAGAAGATATGTTGGCAACCATTTCAGTGTATCGAAATGGCATCCCTATTGGTGAGCTGGCTCCTACTGGAATTCCTATTGTCCCATGGGGAATGCAAGCATTATTGGAATACTTCAAAGGACACTATGCTAATCCTCCTCTAATAATTTATGAAAACGGATATGGGCGGTCCAACAATGAATCTCTTCCACTTGCGGACGCATTAAACGATAAGCCAAGAGCAGCCTACCTCCATGATTATCTTCAAAGCTTGCTTGCAGCTGTCAGGAATGGATCAAACGCCCGCGCATACTTTGTGTGGAGTTTGGTTGATAGTTTCGAGTTTTTATATGGTTATACAATCCGCTACGGGCTGTATTACGTGGATTTCAAACATAGAGATTTGAAGAGGTACCCAAATCTTTCTGTTCGCTGGTACACACATTTCTTAAAGAGATACACAGATCATCGACCTGTCCGATCATGTTGTTACGACCATGATCACAATAACTTCAATGTCTACTCCTTTAGGAAAGAACAGCCACTGCTGGAAGCAATTTAG___AAAGTGAGCTTCAACGGGTCGATATAGATTACAATGGATACGAATCCTGTGAATAATGCGGGTTATTGCGCATAACGATATGTTTTTCATACACTATTTTCATTTTATGGAGTTAGAATCCTACGTTTCTTAATTATAGTGGTGATCCGCAAATATATAATTTGATTTTGTTTTGAGTTCCATGCATTAGGTATCTCTCGACTTCTTACAGTGTTCCACCCTAAGAGTTGAATCCACTCTATCTCTGGTTTATGGAAATTATAAAAGGAGACTTCGTCT

Fln Alignment:

sp_v1.1_unigene28448___LPSFTKQESEKLRGSFDFIGLVHYTTVYASDAPS-YRDLTPRDFLEDMLATISVYRNGIPIGELAPT-GIPIVPWGMQALLEYFKGHYANPPLIIYENGYGRSNNESLPLADALNDKPRAAYLHDYLQSLLAAVRNGSNARAYFVWSLVDSFEFLYGYTIRYGLYYVDFKHRDLKRYPNLSVRWYTHFL
D5ACM5_______________LPLLTEKQSREIRQSFDFIGLNHYSTNYVEDAPAAHANNYERDYFTDLSVRVTVERDGIPIGQMSKIKGFGSVPWGFQELLEYIRQHYGNPPVVVTECGYPDLSNDSIPVAEALNDTNRINYYHDYLQYMLAAIRNGSNTRGFFVWTLLDDFEYVMGYTARFGLHYVDFSD-NLKRYPKLSVRGFKRML

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
564		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain