SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28443

Length: 1204 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28443 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Disease resistance associated protein (Fragment) n=1 Tax=Picea abies RepID=Q2VWL9_PICAB	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	leucine rich repeat-like protein	-	-	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg: your sequence is shorter than subject: 266 - 835

Fln protein: RAEALVLNFSAGSYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFQNLEKLSLSLCEGLGNMSRFNTTQSSLKLPIMLDFNLDHCCDLDELPSDICDMSSVVNWSITNCHLLQKLPDDMEKLSSLRMLRLSACLGLKELPASIGKLGKLEYLDISLCECLKEIPEEIGQLKKLQVLDMRECSRLRKLPKSVEGMKSLRHVICDEKIGQQWLRVKSSVLNELKVEIVDAHFSLDWLDG*

Protein Length: 267

Fln nts: CGAGCAGAAGCCTTGGTTTTAAATTTTTCTGCGGGCAGCTACTTTCTTCCTTCGTTTTTAAGTTCTATGACAAAGCTTAAAGTCCTCATAGTACTCAATTATGGATCAAAGAGAGCCACAGTAAACGGATTACCGTCGCCATCTTCTCTCCCGCAGCTTAAGACCATACGCTTGGAGAGGTTGAATGTGCCTTCACTTCAAGAGCAGAGCAAACTCTTTCAGAACTTAGAAAAACTCTCGTTGAGCTTATGTGAAGGACTTGGAAATATGTCCAGGTTTAACACCACCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGACGAGTTGCCCTCTGATATTTGCGACATGTCTTCAGTGGTAAACTGGTCTATCACCAACTGTCACCTTCTTCAAAAGTTACCTGATGACATGGAAAAGCTTAGCTCTTTAAGAATGTTAAGGCTATCTGCATGTCTAGGCTTGAAAGAGCTACCAGCATCCATTGGAAAACTTGGGAAGCTTGAATATCTGGACATTTCGCTGTGTGAGTGCTTAAAGGAAATTCCCGAGGAAATAGGACAACTAAAGAAACTCCAAGTACTTGACATGAGAGAGTGCTCTCGTTTGAGGAAGCTGCCTAAGTCAGTGGAAGGCATGAAATCTCTGAGGCATGTTATCTGCGATGAGAAGATTGGGCAGCAATGGTTGCGTGTCAAGAGCTCTGTTCTCAACGAGCTTAAAGTTGAAATTGTGGATGCACATTTCAGCTTGGATTGGCTCGATGGTTGA___TATCACCCAGACAGGATGCAGGTGCAACTAGACTGCAATTCACCTGCATTCATGACGAGGACATGGTGCGGTCAAGACCATTTACGCTACTTGCATTTGTTGAAGGTCCAACTTGGTGTTACCCGTGCGTGTAGCTATTCTGAATCTCTACTTGGGTGTTTTTATGGCTTTATGTCGTCTGTGTGAGTGTGCACGCTTTATTTTGAACAAGGACACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTACCAAGCTTATTAGAAGTCCTTGGTGCCCGTGAATGGAAATGGTGATTTCCTTTACAATGCCTTGGTTTATATGGGGTATGTAATGACAATATGTTATATGCAATGACACTAGTAGTTT

Fln Alignment:

sp_v1.1_unigene28443___RAEALVLNFSAGSYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFQNLEKLSLSLCEGLGNMSRFNTTQSSLKLPIMLDFNLDHCCDLDELPSDICDMSSVVNWSITNCHLLQKLPDDMEKLSSLRMLRLSACLGLKELPASIGKLGKLEYLDISLCECLKEIPEEIGQLKKLQVLDMRECSRLRKLPKSVEGMKSLRHVICDEKIGQQWLRVKSSVLNELKVEIVDAHFSLDWLDG
B8LKC3_______________QAEALVLNFSASNYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPAPSSLTQLRTIRLERLNVPSLQEHSRAFQSLEKLSLSLCEGLGNMSRFNSTQSSLKLPIMLDFNLDHCCDLEELPPGICDMSSVENWSITNCHLLQKLPDDMGKLCSLRMLRLSACLGLKELPDSIGKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGLKSLKHVICDEKIGQQWLRVKSSVLKELRVEIVDAHFSLDWLDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain