SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28438

Length: 1806 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28438

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine carboxypeptidase, putative (EC:3.4.16.6)	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	75%
Blast2go	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM39

Fln msg:

Fln protein: MCFLQWLIILTFPFMKVLSAPAGDFVNSLPGQPAVTFKQYAGYVTVNERSDRALFYYFVEAETDPHLKPLVLWLNGGPGCSSFGVGALSENGPFYPKAGKLIRNSCSWNKEANMLYLESPAGVGFSYSKDPSYYMGANDTTTAADNVLFLHGWFKKFPEYKMRELYLTGESYAGHYIPQLAELIVEQNRKEKIFNLKGIAIGNPLLDFVTDLNAREEFLWSHGLVSDPTYNMMKTRCNYSSLLREAIRGTVSLTCDQIYSIVSMEISKYINKYDVTIESCLSSLLMQKSKMMFGVTGTTTVKPDVCVQDEATSYLNTPAVQKAFHARLVGSVKGWEACSSVLEYDDRNMENPTIPLLGKLVMAGTRVLVYSGDQDSIIPLTGTRTLVNNLATSLKLNTTVPYSVWFQGKQVAGWVQVYGNILSFATVRGGGHEVPFSQPERSLTLFESFLKGQPPPSSMV*

Protein Length: 462

Fln nts: TAATTTGTGTAATCATACACTGAAGGCACAAGATATACAAGATTGTTGATTTAGACATTGTAAACTCAGTTTGCCAGTTTAAGATCAGTTCTTAATTCAGTGACAAAGTTGGGATCTGTAGAGCATTGCAACTTTCAAG_-_ATGTGTTTTCTTCAATGGCTGATCATTCTAACCTTTCCATTCATGAAAGTCCTCTCAGCTCCAGCAGGTGATTTTGTGAACAGTCTACCTGGACAGCCTGCAGTGACCTTCAAGCAATATGCTGGATATGTCACAGTGAATGAGAGGAGCGACCGGGCTTTGTTCTACTACTTTGTAGAAGCTGAAACAGATCCACATTTGAAGCCTTTGGTTTTGTGGCTCAATGGAGGGCCTGGATGCTCTTCATTCGGAGTTGGGGCGTTATCAGAGAATGGTCCATTTTATCCCAAGGCAGGCAAATTGATACGAAATAGTTGCAGTTGGAACAAAGAAGCAAACATGCTTTATCTGGAAAGTCCGGCAGGAGTTGGATTTTCATATTCTAAAGATCCATCATACTATATGGGTGCCAATGACACCACAACAGCTGCCGATAACGTGCTATTTCTTCATGGTTGGTTTAAAAAGTTTCCAGAGTACAAGATGAGAGAGCTATATTTGACAGGGGAAAGCTATGCAGGTCACTATATTCCTCAATTGGCAGAGCTTATTGTGGAGCAGAACAGAAAAGAGAAGATCTTCAATCTGAAGGGTATAGCTATTGGCAACCCATTGCTTGATTTCGTCACAGATCTAAATGCAAGGGAGGAATTCCTATGGTCACATGGCCTTGTATCTGATCCAACATACAACATGATGAAAACGCGCTGCAATTATAGTAGCCTTCTGAGAGAGGCCATCAGAGGCACAGTGTCATTGACCTGTGATCAAATTTACTCGATTGTCAGCATGGAAATCAGCAAATACATTAATAAATACGACGTCACAATCGAAAGCTGTTTGTCATCTCTTCTCATGCAGAAATCTAAGATGATGTTCGGGGTGACAGGAACCACGACAGTAAAGCCAGACGTTTGCGTACAGGACGAAGCTACCTCCTATCTGAATACGCCCGCTGTACAAAAAGCATTCCATGCTCGGCTTGTTGGAAGTGTTAAAGGATGGGAAGCCTGCAGCAGTGTACTGGAATATGATGATCGTAATATGGAGAACCCAACTATTCCTTTACTTGGAAAACTTGTCATGGCTGGCACACGAGTCTTGGTTTACAGTGGAGATCAGGACTCTATCATACCTCTAACTGGTACACGCACATTGGTAAACAATCTTGCTACTTCTCTGAAACTAAATACAACAGTTCCCTACAGTGTTTGGTTTCAAGGAAAGCAGGTGGCAGGATGGGTGCAGGTTTACGGAAATATTTTATCATTCGCAACAGTGAGAGGAGGAGGCCACGAAGTGCCATTTTCACAACCAGAGAGATCTCTAACATTGTTCGAGTCATTTCTGAAAGGCCAACCTCCTCCTAGCAGCATGGTGTAG___ACAGCTCATCCCATACAAATAAATGGATAGACTGGGGCTAAGCCAATTGTTGTGCCGTAACCAAATTAAGGCGCCTTTAAATATCTCCGAAGATTTTGTCGATTCAAAATGAAATCTTAGGGAACAATTGATTATATGATAAGTGTTATGATTATGATTGTCAATTAAAATGGAAATCTGCGGGGACTATTGATTATATGATAAGGGTTAAGATTATTATTGTGTTGATCATGTTATGAATTGAGTTTGTTTCTATATTAATAGCTAAATAGATTCTTTTAATG

Fln Alignment:

sp_v1.1_unigene28438___MCFLQWLIILTFPFMKVLSAPAGDFVNSLPGQPAVTFKQYAGYVTVNERSDRALFYYFVEAETDPHLKPLVLWLNGGPGCSSFGVGALSENGPFYPKAGKLIRNSCSWNKEANMLYLESPAGVGFSYSKDPSYYMGANDTTTAADNVLFLHGWFKKFPEYKMRELYLTGESYAGHYIPQLAELIVEQNRKEKIFNLKGIAIGNPLLDFVTDLNAREEFLWSHGLVSDPTYNMMKTRCNYSSLLREAIRGTVSLTCDQIYSIVSMEISKYINKYDVTIESCLSSLLMQKSKMMFGVTGTTTVKPDVCVQDEATSYLNTPAVQKAFHARLVGSVKGWEACSSVLEYDDRNMENPTIPLLGKLVMAGTRVLVYSGDQDSIIPLTGTRTLVNNLATSLKLNTTVPYSVWFQGKQVAGWVQVYGNILSFATVRGGGHEVPFSQPERSLTLFESFLKGQPPPSSMV
B8LM39_______________MCFLQLLIILAFLFIKVLSAPEGHVVNRLPGQPAVTFKQYAGYITVNEKSDRALFYYFVEAETEPDLKPLVVWLNGGPGCSSFGVGALSENGPFYPKAGKLIRNSCSWNKEANMLYLESPAGVGFSYSNDPSYYMGANDSKTAVDNLLFLHGWFNKFPEYKTRELYLTGESYAGHYIPQLAELIVEENRKKKSFNLKGISIGNPLLDFITDLNARAEFLWSHGLVSDPTYNMMKTGCNYSRLLDEAFRGGVSSTCEHIYLTVSMEISKFIDKYDVTLESCLSSLLMQKSKMMIGVTRTATVKPDVCVQDEATSYLNMADVQKAFHARLVGNVKTWEACSDVLEYDDLNWEIPTIPLLGKLVKAGIRVLIYSGDQDSIIPLTGTRTLVNNLAASLQLNTTVPYRVWFQGKQVAGWVQVYGNTLSFATVRGAGHEVPFSQPERSLVLFKAFLQGQPPPSIMM

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1414	90		9		0.999842
1470		76		23	1.0
1569	18			81	1.0
1601	87	12			0.999964
1602	87		12		0.999964
1603	87	12			0.999964
1604	12			87	0.999964
1605	87		12		0.999964
1607		87	12		0.999964
1608	12			87	0.999964
1609		87	12		0.999964
1610		87		12	0.999964
1615	87		12		0.999964
1616		12		87	0.999964
1617		12		87	0.999964
1640			26	73	1.0
1643			92	7	0.999664

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain