SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28429

Length: 1764 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28429

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	r2r3-myb transcription factor, putative	-	-	3.99931e-42	34%
FL-Next	sp=Transcription factor GAMYB; Oryza sativa subsp. japonica (Rice).	-	-	0.0	29%
Blast2go	r2r3-myb transcription	-	-	2.8026e-45	45%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	2.8026e-45	45%
Blast2go	response to organic substance	GO:0010033	Biological Process	2.8026e-45	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0JIC2

Fln msg: your sequence is shorter than subject: 416 - 553

Fln protein: LEIPNVTFDSLKPSQHALTYTSFPALTEVSMSSILNQALGLSQSYRMVNPIQRAKRVRDSESMMPFGVGGGGISPFGQFVDDTPLKSIGEPCFKTARRMPYAQPPRLDGSSYSQPPRLDGFGANGFPYDPNLSNRNSNHNLSTPLGGLMIGSHALLNGNLSPPTPLPGVKLELPSSQLAESVHTTGTRLETVTTPTENNSYTLPPPVPSNHVDGFSPHNSGLLEALLQESQAMGGGGNKRSSEMITQLPPISSRSNLTNCVGASQSETECGEYSDPITPLGGPAASVFSENTPPLSTSPWDESSSAQSAIGVNIKTEERNEFMSSTNCGDEEFSTLLNLARPDVSPVSDWYDSHAEVVEKEQSAVSDALATLFNDDFCVDIQQLASGPSTSNQVWGLGSCHWNNMPGVTQIADLP*

Protein Length: 417

Fln nts: ACTTGAGATTCCTAATGTCACCTTTGATAGTCTGAAACCTAGCCAGCATGCATTGACATACACTTCGTTTCCGGCTTTGACAGAGGTTTCCATGAGTTCGATTCTGAATCAGGCACTGGGATTGTCACAGAGTTACCGTATGGTAAACCCAATTCAGCGTGCAAAGCGGGTTCGGGATAGCGAGAGCATGATGCCCTTTGGTGTAGGAGGAGGAGGGATCTCCCCTTTTGGTCAGTTTGTCGATGACACCCCATTAAAGAGCATAGGGGAACCGTGCTTCAAGACTGCTCGGCGAATGCCATATGCTCAGCCTCCCAGATTGGATGGGTCGTCATATTCTCAGCCTCCCAGATTGGATGGGTTTGGGGCAAATGGTTTTCCTTATGATCCTAATCTGAGCAACAGGAATTCCAATCATAATCTATCAACGCCCCTTGGGGGTTTGATGATTGGCAGCCATGCCCTTTTGAATGGCAATCTCTCTCCTCCTACACCCTTACCAGGTGTGAAGTTGGAGCTCCCTTCAAGCCAACTTGCGGAGTCTGTGCATACCACAGGCACGCGCCTGGAGACAGTGACTACTCCTACAGAAAATAACTCATACACACTGCCCCCTCCTGTTCCATCCAACCATGTTGATGGCTTCTCCCCACACAACAGTGGGTTGTTAGAAGCTTTGCTGCAGGAGTCTCAAGCAATGGGTGGCGGCGGGAATAAGCGATCTTCGGAAATGATCACACAATTGCCACCAATCTCATCAAGAAGTAACTTGACCAATTGTGTTGGAGCAAGCCAGTCGGAAACAGAATGCGGTGAATACAGTGATCCAATCACCCCTCTGGGTGGTCCTGCCGCTTCAGTATTCAGTGAAAACACACCCCCCTTGAGCACCAGTCCATGGGACGAGTCATCATCCGCTCAGTCAGCAATTGGGGTGAACATAAAGACTGAGGAGCGCAACGAATTTATGTCTAGTACTAACTGTGGAGATGAAGAATTTTCTACGTTATTGAATCTTGCAAGGCCAGATGTTTCGCCTGTCTCAGATTGGTATGATTCCCATGCTGAGGTTGTTGAGAAAGAGCAATCTGCTGTTAGTGATGCTCTTGCCACGCTATTCAATGATGATTTCTGTGTAGATATTCAGCAGCTGGCATCAGGACCTTCTACATCAAATCAAGTTTGGGGTCTTGGTTCTTGCCACTGGAATAATATGCCTGGTGTCACACAAATCGCTGATCTTCCTTGA___GATTTCAAATTTCATCTTTAACTACAGTATAGGGTCTTGAAGACAGTCGGTGTATCAAGACAGTGTAAACAGGAGCTAATTCAATGAATTTGGACAGTTGATAGTCTTCCGCAAGTAGCTGTAACAGGTTAACTGGATTGCAAATGCTTTCATATTGAAGATTATGGTTTGAATTAGGAATATGATCGCAAAAGAAAGCATATTTATAGTATATTAAAGTGGTATCCATCTACTATGTGTGGGCTAAGCCAGATATTGGAGGCAGAGACTAAGTTTCAATTAGATTAGCAGGTTCTTGTGCTAGAGTAGCAGCAGTCAGGTCAAACTGTTGTAAATGTGTAGTTGGATAGTCATTATAGAAGGTCTATGATATAGAATCCTAATTCACTGCAAACTTATCATGATCTATTGGTACTTATGTAATTCTCCTTGATGGTTTTTGTTGGGATCCTAGTGGTCCCGTGTGTTTGATCAAAAAAGCCGGAAATATAGCATTTGATGATGTATTTGATGTT

Fln Alignment:

sp_v1.1_unigene28429___PLGGLMIGSHALLNGNLSPPTPLPG-VKLELPSSQLAESVHTTGTRLETVTT--PTENNSYTLPPPV--PSNHVDGFSPHNSGLLEALLQESQAMGGGGNKRSSEMITQLPPISSRSNLTNCVGASQSETECGEYSDPITPLGGPAASVFSENTPPLSTSPWDESSSAQSAIGVNIKTEERNEFMSSTNCGDEEFSTLLNLARPDVSPVSDWY--DSHAEVVEKEQSAVSDALATLFNDDFCVDIQQLASGPSTSNQVWGLGSCHWNNMPGVTQIAD
Q0JIC2_______________PFGGALNGSHAFLNGNFSASRPTSGPLKMELPSLQDTESDPNSWLKYTVAPALQPTELVDPYLQSPAATPSVKSECASPRNSGLLEELIHEAQTLRSGKNQQTSVISSS----SSVGTPCNTTVLSPEFDMCQEYWEEQHP--GP----FLNDCAPFSGNSFTESTPPVSAASPDIFQLSKVSPAQSTSMGSGEQVMGPKYEPGDTSPHPENFRPDALFSGNTADPSVFNNAIAMLLGNDLSIDCRPVLGDGIMFN------SSSWSNMPHACEMSE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1496		89		10	0.999919
1687	12		87		0.992554
1727	20		80		0.995493
1730	20			80	0.995493
1731	20			80	0.995493
1732			20	80	0.995493
1744	25		75		0.996473
1745		75	25		0.996473
1747		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
205	216	AGG AGG AGG AGG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain