SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28426

Length: 1108 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28426

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RH31_RICCO	-	-	9.94922e-44	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	double-stranded rna binding	-	-	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Double-stranded RNA-binding	IPR001159	-	0.0	67%
Blast2go	Double-stranded RNA-binding-like	IPR014720	-	0.0	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADH3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 326 - 505

Fln protein: NKARNKDMILL*VC*KGRQWNEETSKQSDSRSSPSQLLSAMHKNQLQDLAFRGGFSLPSYSSVRKGPPHVPLFKAFVTFEGETYESPEFYGTLRQAEHAAAAVALKSLTKKGFSLDESAMYKNFLQEFAQKEGIPFPEYMTDRSGPSHISIFKSTVKFAGLAFVGKEANSKKQAEKNAAMAAWSALKDGRSLSVSTRKTSDNGEKEADHEPNVNIQQSRGHLVSHLNKSLSALSLTDSPDSEDTDKGKKKELEQNMAASTLTCKDKDTVQQPHSIPLHKQIPSGTTIRVVPQPGPVSGTGPQIRNNTWVAMNLTDNAMQNKHNST*

Protein Length: 327

Fln nts: GGAACAAGGCAAGGAACAAGGACATGATATTGCTGTAAGTGTGCTAGAAAGGAAGGCAATGGAATGAAGAAACAAGCAAGCAATCAGATAGTAGATCATCACCTTCACAGCTTCTGTCAGCCATGCACAAAAATCAGCTGCAAGATTTAGCTTTCAGGGGTGGTTTCAGTTTGCCTTCATATTCCTCTGTGCGGAAAGGCCCTCCACATGTACCTCTTTTCAAGGCATTTGTTACATTTGAAGGGGAGACATATGAGAGTCCAGAATTCTATGGTACATTGCGGCAAGCTGAACATGCAGCTGCAGCAGTAGCACTAAAGTCACTGACAAAAAAAGGGTTTTCCCTGGACGAGTCTGCTATGTACAAGAATTTTTTGCAAGAGTTTGCCCAGAAGGAAGGAATTCCTTTCCCAGAGTACATGACAGACCGATCTGGCCCATCACATATATCTATTTTCAAAAGCACTGTTAAGTTTGCTGGGTTGGCATTTGTAGGCAAAGAAGCCAATTCTAAGAAACAAGCAGAGAAGAATGCAGCAATGGCTGCATGGTCTGCTCTCAAAGATGGTAGGAGCTTGTCTGTTTCAACAAGGAAAACTTCGGACAATGGAGAAAAAGAAGCAGACCATGAACCAAATGTTAATATACAACAATCACGTGGTCACTTGGTTTCTCATCTTAACAAGAGTCTTTCTGCTTTATCTCTTACAGACAGTCCTGATTCAGAAGATACAGATAAAGGAAAAAAGAAAGAGCTCGAACAAAATATGGCAGCAAGTACACTAACATGTAAAGATAAGGACACGGTCCAACAACCGCATAGTATACCATTACACAAACAAATTCCTTCAGGCACAACAATCAGGGTTGTTCCCCAACCAGGGCCTGTGAGTGGCACTGGTCCGCAGATTAGGAATAACACATGGGTTGCGATGAACTTAACTGATAATGCAATGCAGAATAAACATAATTCCACTTAA___ATGCATTGCTATATATTTTGGAACTGATTTCAGATACGACTGGTATATAAATTGTCAAATCTTGAGAATCATTTTTTCTAGGAAGTTGGGGTCTATGTCATTTATACCATAGCTTGAAATGAGAGCTT

Fln Alignment:

sp_v1.1_unigene28426___RQWNEETXXXXXXXXXXXXXXXAMHKNQLQDLAFRGGFSLPSYSSVRKGPPHVPLFKAFVTFEGETYESPEFYGTLRQAEHAAAAVALKSLTKKGFSLDESAMYKNFLQEFAQKEGIPFPEYMTDRSGPSHISIFKSTVKFAGLAFVGKEANSKKQAEKNAAMAAWSALKDGRSLSVSTRKTSDNGEKEADHEPNVNIQQSRGHLVSHLNKSLSALSLTDSPDSEDTDKGKKKELEQNMAASTLTCKDKDTVQQPHSIPLHKQIPSGTTIRVVPQP--GPVSGTGPQIRNNTWVAMNLTDNAMQNKHNST
D5ADH3_______________RQWNEETSKQSDCTSIPSQFLSDMHKNQLQDLALRGGFSLPSYSSTRKGPPHVPLFKAFVTFKEETFESPDFYGTLRQAEHAAAAVALKSLTKEGFSIDESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFKSTVKFAGTTFAGKEANSKKQAEKNAAMAAWSAVKN------------------------------------------------DSPDSEDTNTGTKKELEQNMTASTTACKDKDTVQQPHSIPLHKQLPSGTTIRVVPQPLKGPVSGTGLPTRNNTWVAMNLTDNAMQSKHNST

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
943	85		14		0.993533
1012		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain