SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28402

Length: 1510 nt

Origin of reads: Biogeco_2

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28402

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone synthase n=47 Tax=Pinaceae RepID=CHSY_PINSY	-	-	90%
FL-Next	tr=Chalcone synthase; Pinus pinaster (Maritime pine).	-	-	94%
Blast2go	chalcone synthase	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	Chalcone/stilbene synthase, N-terminal	IPR001099	-	94%
Blast2go	Polyketide synthase, type III	IPR011141	-	94%
Blast2go	Chalcone/stilbene synthase, C-terminal	IPR012328	-	94%
Blast2go	Thiolase-like, subgroup	IPR016038	-	94%
Blast2go	Thiolase-like	IPR016039	-	94%
Blast2go	Chalcone/stilbene synthase, active site	IPR018088	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q8GUU4

Fln msg:

Fln protein: MAAGMMKDLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIIGADPVPEVEKPCFELIWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGISVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLSATRQVLSDGNMSSAGNMSSACVHFILDEMRKSSKEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ*

Protein Length: 393

Fln nts: CGCTTGTGCTGTGTGGTAGCGGAGTGGTAAATAGTGCCAAGTGCCATAATAACAATT_-_ATGGCTGCAGGTATGATGAAGGATTTGGAGGCATTCAGGAAGGCTCAGAGGGCAGATGGCCCAGCCACCATCCTCGCTATTGGCACTGCCACTCCCCCCAATGCGGTTGATCAGAGTACTTACCCGGATTACTACTTCAAAATCACTAATAGCCATATGACAGAGCTCAAGGAGAAATTCAGGAGAATGTGTGACAAATCCGCAATAAAAAAGAGATATATGTACTTGACAGAGGAGATCCTTCAGGAGAATCCCAGCGTATGTGCATACATGGCGCCATCGCTGGACGCACGGCAGGACATGGTTGTGGTGGAGGTGCCCAGGCTTGGAAAAGAAGCGGCTGCCAAGGCCATCAAGGAGTGGGGACAGCCCAAGTCCAAGATCACCCATGTCGTTTTCTGCACTACCAGTGGCGTCGACATGCCCGGAGCCGACTATCAGTTGACAAAGCTTCTTGGCCTCCGCCCGAGCGTCAAGAGAGTCATGATGTACCAACAGGGCTGCTTTGCTGGAGGCACCGTCCTCCGCGTGGCTAAAGATCTGGCTGAGAACAATAGGGGAGCTCGGGTTCTGGTCGTCTGCAGTGAAATAACAGCCGTTACCTTCCGTGGCCCGTCCGACACTCACCTAGACAGTATGGTCGGCCAAGCTCTCTTTGGCGACGGTGCGGCCGCCCTCATCATCGGAGCCGATCCCGTCCCTGAGGTGGAGAAGCCGTGTTTCGAGCTGATATGGACTGCTCAGACAATTCTTCCTGACAGCGACGGAGCCATTGACGGGCACCTGAGAGAGGTAGGCCTTACCTTTCACCTTCTCAAAGACGTTCCCGGGATCTCCGTTGAGGCATTCCAGCAGTTCGGAATCTCGGACTGGAACCAGTTATTCTGGATCGCACATCCCGGAGGTCCTGCCATTCTGGATCAGGTGGAGGCCAAGCTAAATTTGGATCCCAAGAAACTAAGTGCCACGAGGCAAGTACTGAGCGACGGAAACATGTCAAGCGCGGGAAACATGTCGAGCGCCTGCGTGCACTTTATCTTGGACGAGATGAGGAAGTCCTCTAAAGAGAAAGGATGTTCCACCACCGGAGAGGGACTGGATGTGGGAGTTCTGTTCGGATTCGGGCCGGGCCTCACCGTGGAAACCGTCGTCCTCAAGAGCGTTCCCCTGCAATAA___TTCAGAAACGGGCTCGATATTAGTTATGTGTGACTGGGAGGTTAGCGGGATTAAAATTGCGTAAATATTTTCTGTAATTCCTAAGTATTCAGGTTTCCTTAGGGTACGATGCAATGCTTTAGGGTTTGATATAATGGCGCTGTCTGATAACTTAAATTACTGGCCTATATTTACATAATGGGCCTTTTTCTTTGAGCCTTTTTCCAATTTCCCATGGTTTTGAGAGGAATATTGTTCTTCCTGTTTGTGGCTAACTAAGCCTTTCAATGAACCATTT

Fln Alignment:

sp_v1.1_unigene28402___MAAGMMKDLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNS-HMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQXXXXXXXXXXXXXXXPVPEVEKPCFELIWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGI--------SVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLSATRQVLSDGNMSSAGNMSSACVHFILDEMRKSSKEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ
Q8GUU4_______________MAAGMMKDLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELLWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSD-----YGNMSSACVHFILDEMRKSSHQNGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1149	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain