SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28338

Length: 2225 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28338
CTGGGTCTATTTGTGGGTGTATTGGGCGTCATTTTCTGATCAAAGCTTCTGAATCGCTGGGTACTTTTCCTTTTGTGCTCCAGTCTGATTCTGCTATCTGGTCGAGTTCTGGCTGGGTATTTTCGATCTGCAATCCGGTCGGATATTTTTAACTATTTGCCAATTTCCCACAAATTTGTTTTGGATCTAATAACTGGTATCCGCATGAGCCTTTATATTCACTTGATAGGGTTCGCAAATTCAAGACATAATATTTTCCATATTTTCAGATTCATCTTTGGTTATTATCCCTTGTTGTTGGACCCTCTCTATTTGAATATTGACTGTACCTCGAATTTAACGAATTGGAAAATCTGCTCTCATCATGGCGACGGCTGAAAAACAAAGCTCTCAATTGAATTCTGTTGTTTGTTCTTCCAACAGGGATCATTCTTCCTCTCCTTCAGTAATTGTCATCGGTGGTGGATTTGGTGGGATAGCAGCTGCTCGTGCTCTTCGGAATGCCTCATTCAAGGTCGTTGTGCTGGAGTCACGAAATAGAATTGGTGGACGTGTCAATACAGATTACTCATTTGGATTCCCGGTAGACATGGGTGCCTCATGGTTACATGGTGTGTGTAATAAAAATCCGTTGGCTCCTTTGATTGGCAAATTGGGACTCCCACTGTACCGAACCAGCGGTGATAATTCCGTGTTATATGACCATGATCTAGAAAGCTATGCACTTTTTGACATGGAGGGGCATCAAGTTCCACAAGAGTTGGTAACTGAAGTTGGAGAGGCATTTGAAAGAGTTTTAGAAGAGACCAAAAAGGTGCGTGAAGAATTTAAATATGACATGTCAATGCGGAAGGCGTTTTCAATTGTTTTGGAAAGGCATTCAGATCTAAGACAGCATGGACTTGCAGACAAAGTCTTCCAGTGGTATTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCAGATAGCATATCCCTAAAAAGTTGGGATCAGGAAGAACTTATTGAAGGAGGGCATGGGTTGATGGTACAAGGTTATTATCCTGTGATAGAAGCTCTTGCGAAAGGGCTTGACATACGCCTCAATCATAGGGTTACAAAAGTTACTTGGCGACATGGTGGAGTAAGAGTTGTTGTTGAGGATGGCAGAGTTTTTGTAGCTGATGCAGCTATCATTGCAGTTCCCCTTGGTGTTCTAAAAGCAAATACAATTAAATTTGAGCCACGGCTGCCAAAGTGGAAAGAGGTGGCAATATCAGACTTGGGATTTGGCAATGAGAACAAGATTGCTTTATATTTTGACAAAGTATGCTGGCCAAAAGTGGACTTTTTAGGTGTGGTTGCACCTACTTCTTATGGATGTAGCTATTTTTTGAATTTGCACAAAGCAACAGGACATCGTGTTCTTGTATACATGCCTGCTGGGCAACTTGCTAATGACATAGAAAGGATGTCTGATGAAGCAGCCACTAGCTTTGCAGTGTTGCAGCTGAAAAGAATACTGCCGCATGCATCAGAACCAATAAAATCTCTGGTGTCACATTGGGGTACAGATCCAAGCTCTCTGGGTTCTTATAGTTATGATACTGTGGGTAAGCCTCATGATCTGTACGAGTGCTTGCGTATCCCTATCGACAACCTCTTTTTTGCAGGAGAGGCTACCAGTATGAGTTATCCTGGTACAGTGCATGGGGCATTTTCTACAGGAATAATGGCTGCTGATGGTTGCAGGAGGCATCTTGTAGAAAGATATAGAGATTTGCAGATTTTCCAGCCTGTTATGGGGGAGGAGCTCACCAGTGAGTCAGTACCCCTCCAAATATCAAGGCTGTGAGCTGCTTATCTACGGGTTTTAAAATTTACTCCTTTATTCAGTTCAAAAGTTAGGTATTACTCTGCACTAAATAATGTGGAGAGGTCCTATAATGTAAACCTTAACTAGAATTAAAGATTTTTATGGCATGCAGGTTTATTACCTATTTCATTGAAATTTCTATCTATTTCCAATGTTTTATGCTTCTTTATGGACTTGGAAAGTAGTTTCCTAGGAAGATCGGAGCAGCGTTTCCATTGAAAAGTGGTTTTCTTGCTCCACTCTGTATTACTTGGGTCACTTTCTCTTGTATTTTTTCTTCTGCTCAATCCAGAATGGCCATTGTGGAGATCTCGTCTATAGCAAACCTTGACTAGAATTTAAAATTTTATAACATGCAGGTATATCACCT

Ace file of the UniGene sp_v1.1_unigene28338

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	amine oxidase, putative (EC:1.4.3.4)	-	-	70%
FL-Next	sp=Probable polyamine oxidase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferred entry: 1.5.3.13, 1.5.3.14, 1.5.3.15, 1.5.3.16 and 1.5.3.17.	EC:1.5.3.11	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	polyamine catabolic process	GO:0006598	Biological Process	82%
Blast2go	polyamine oxidase activity	GO:0046592	Molecular Function	82%
Blast2go	peroxisome	GO:0005777	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Flavin amine oxidase	IPR001613	-	0.0	82%
Blast2go	Amine oxidase	IPR002937	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SKX5

Fln msg:

Fln protein: MATAEKQSSQLNSVVCSSNRDHSSSPSVIVIGGGFGGIAAARALRNASFKVVVLESRNRIGGRVNTDYSFGFPVDMGASWLHGVCNKNPLAPLIGKLGLPLYRTSGDNSVLYDHDLESYALFDMEGHQVPQELVTEVGEAFERVLEETKKVREEFKYDMSMRKAFSIVLERHSDLRQHGLADKVFQWYLCRMEGWFAADADSISLKSWDQEELIEGGHGLMVQGYYPVIEALAKGLDIRLNHRVTKVTWRHGGVRVVVEDGRVFVADAAIIAVPLGVLKANTIKFEPRLPKWKEVAISDLGFGNENKIALYFDKVCWPKVDFLGVVAPTSYGCSYFLNLHKATGHRVLVYMPAGQLANDIERMSDEAATSFAVLQLKRILPHASEPIKSLVSHWGTDPSSLGSYSYDTVGKPHDLYECLRIPIDNLFFAGEATSMSYPGTVHGAFSTGIMAADGCRRHLVERYRDLQIFQPVMGEELTSESVPLQISRL*

Protein Length: 491

Fln nts: CTGGGTCTATTTGTGGGTGTATTGGGCGTCATTTTCTGATCAAAGCTTCTGAATCGCTGGGTACTTTTCCTTTTGTGCTCCAGTCTGATTCTGCTATCTGGTCGAGTTCTGGCTGGGTATTTTCGATCTGCAATCCGGTCGGATATTTTTAACTATTTGCCAATTTCCCACAAATTTGTTTTGGATCTAATAACTGGTATCCGCATGAGCCTTTATATTCACTTGATAGGGTTCGCAAATTCAAGACATAATATTTTCCATATTTTCAGATTCATCTTTGGTTATTATCCCTTGTTGTTGGACCCTCTCTATTTGAATATTGACTGTACCTCGAATTTAACGAATTGGAAAATCTGCTCTCATC_-_ATGGCGACGGCTGAAAAACAAAGCTCTCAATTGAATTCTGTTGTTTGTTCTTCCAACAGGGATCATTCTTCCTCTCCTTCAGTAATTGTCATCGGTGGTGGATTTGGTGGGATAGCAGCTGCTCGTGCTCTTCGGAATGCCTCATTCAAGGTCGTTGTGCTGGAGTCACGAAATAGAATTGGTGGACGTGTCAATACAGATTACTCATTTGGATTCCCGGTAGACATGGGTGCCTCATGGTTACATGGTGTGTGTAATAAAAATCCGTTGGCTCCTTTGATTGGCAAATTGGGACTCCCACTGTACCGAACCAGCGGTGATAATTCCGTGTTATATGACCATGATCTAGAAAGCTATGCACTTTTTGACATGGAGGGGCATCAAGTTCCACAAGAGTTGGTAACTGAAGTTGGAGAGGCATTTGAAAGAGTTTTAGAAGAGACCAAAAAGGTGCGTGAAGAATTTAAATATGACATGTCAATGCGGAAGGCGTTTTCAATTGTTTTGGAAAGGCATTCAGATCTAAGACAGCATGGACTTGCAGACAAAGTCTTCCAGTGGTATTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCAGATAGCATATCCCTAAAAAGTTGGGATCAGGAAGAACTTATTGAAGGAGGGCATGGGTTGATGGTACAAGGTTATTATCCTGTGATAGAAGCTCTTGCGAAAGGGCTTGACATACGCCTCAATCATAGGGTTACAAAAGTTACTTGGCGACATGGTGGAGTAAGAGTTGTTGTTGAGGATGGCAGAGTTTTTGTAGCTGATGCAGCTATCATTGCAGTTCCCCTTGGTGTTCTAAAAGCAAATACAATTAAATTTGAGCCACGGCTGCCAAAGTGGAAAGAGGTGGCAATATCAGACTTGGGATTTGGCAATGAGAACAAGATTGCTTTATATTTTGACAAAGTATGCTGGCCAAAAGTGGACTTTTTAGGTGTGGTTGCACCTACTTCTTATGGATGTAGCTATTTTTTGAATTTGCACAAAGCAACAGGACATCGTGTTCTTGTATACATGCCTGCTGGGCAACTTGCTAATGACATAGAAAGGATGTCTGATGAAGCAGCCACTAGCTTTGCAGTGTTGCAGCTGAAAAGAATACTGCCGCATGCATCAGAACCAATAAAATCTCTGGTGTCACATTGGGGTACAGATCCAAGCTCTCTGGGTTCTTATAGTTATGATACTGTGGGTAAGCCTCATGATCTGTACGAGTGCTTGCGTATCCCTATCGACAACCTCTTTTTTGCAGGAGAGGCTACCAGTATGAGTTATCCTGGTACAGTGCATGGGGCATTTTCTACAGGAATAATGGCTGCTGATGGTTGCAGGAGGCATCTTGTAGAAAGATATAGAGATTTGCAGATTTTCCAGCCTGTTATGGGGGAGGAGCTCACCAGTGAGTCAGTACCCCTCCAAATATCAAGGCTGTGA___GCTGCTTATCTACGGGTTTTAAAATTTACTCCTTTATTCAGTTCAAAAGTTAGGTATTACTCTGCACTAAATAATGTGGAGAGGTCCTATAATGTAAACCTTAACTAGAATTAAAGATTTTTATGGCATGCAGGTTTATTACCTATTTCATTGAAATTTCTATCTATTTCCAATGTTTTATGCTTCTTTATGGACTTGGAAAGTAGTTTCCTAGGAAGATCGGAGCAGCGTTTCCATTGAAAAGTGGTTTTCTTGCTCCACTCTGTATTACTTGGGTCACTTTCTCTTGTATTTTTTCTTCTGCTCAATCCAGAATGGCCATTGTGGAGATCTCGTCTATAGCAAACCTTGACTAGAATTTAAAATTTTATAACATGCAGGTATATCACCT

Fln Alignment:

sp_v1.1_unigene28338___MATAEKQSSQLNSVVCSS--NRDHSSSPSXXXXXXXXXXXXXXRALRNASFKVVVLESRNRIGGRVNTDYSFGFPVDMGASWLHGVCNKNPLAPLIGKLGLPLYRTSGDNSVLYDHDLESYALFDMEGHQVPQELVTEVGEAFERVLEETKKVREEFKYDMSMRKAFSIVLERHSDLRQHGLADKVFQWYLCRMEGWFAADADSISLKSWDQEELIEGGHGLMVQGYYPVIEALAKGLDIRLNHRVTKVTWXXXXXXXXXXXXXXXXADAAIIAVPLGVLKANTIKFEPRLPKWKEVAISDLGFGNENKIALYFDKVCWPKVDFLGVVAPTSYGCSYFLNLHKATGHRVLVYMPAGQLANDIERMSDEAATSFAVLQLKRILPHASEPIKSLVSHWGTDPSSLGSYSYDTVGKPHDLYECLRIPIDNLFFAGEATSMSYPGTVHGAFSTGIMAADGCRRHLVERYRDLQIFQPVMGEELTSESVPLQISRL
Q9SKX5_______________MESRKNSDRQMRRANCFSAGERMKTRSPSVIVIGGGFGGISAARTLQDASFQVMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTQIGVTFERILEEINKVRDEQDADISISQAFSIVFSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKCWDQEELLPGGHGLMVRGYRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLERYGELDLFQPVMGEE-GPASVPLLISRL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1986	80		20		0.999996
1988		12		87	0.992554
2066	20		80		0.995493
2097		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain