SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28334

Length: 1202 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28334 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xylem serine proteinase 1 precursor, putative (EC:1.3.1.74)	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	68%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	68%
Blast2go	Peptidase S8, subtilisin-related	IPR015500	-	68%
Blast2go	Peptidase S8, subtilisin, Ser-active site	IPR023828	-	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAS9

Fln msg: your sequence is shorter than subject: 303 - 394

Fln protein: VVSDDAAIILAYINSTTTPVAQIVPATTVLGTTPAPFMAAFSSTGPNLLNPDIVKPDISAPGLNILAAWSGAASPTKLLMDDRRVKYNIISGTSMSCPHVAGVAALLRVIHPKWSPAAIKSALMTTANVTNNEGNPISDASGNPATPFNYGSGQMNPNRASDPGLLYDAIIEDYLLFLCGSGINAATILPSTSFKCPETPPKAYQLNYPSVAIANLNNNETVIRTVTNVGGKSDYTVSVEEPPGVSVDINPKKLSFQSAGEKQTFTIEFTLQKPLNKKYVFGSYTWSDGNHLVRSPIAVSSM*

Protein Length: 304

Fln nts: GTGGTCTCTGATGATGCAGCAATCATACTCGCCTATATCAATTCTACCACGACACCCGTTGCACAGATTGTTCCAGCTACCACTGTCCTGGGAACCACGCCAGCGCCATTCATGGCTGCCTTCTCTTCCACCGGCCCTAATTTGCTCAATCCAGATATCGTCAAGCCAGATATTTCAGCACCTGGTCTAAACATACTGGCAGCTTGGAGTGGAGCAGCCTCTCCCACTAAGCTTCTAATGGACGATCGTCGTGTAAAGTACAATATTATCTCTGGGACATCAATGTCATGCCCACATGTTGCAGGAGTAGCAGCACTCTTAAGAGTCATTCATCCAAAATGGAGCCCTGCTGCTATCAAATCTGCCCTCATGACCACAGCAAATGTTACAAACAATGAAGGGAATCCAATATCAGATGCATCTGGAAATCCAGCTACACCCTTCAACTATGGATCAGGTCAAATGAACCCCAATAGGGCATCAGATCCAGGCCTGTTGTATGATGCCATAATAGAAGATTATCTTCTCTTTCTTTGTGGCAGTGGTATCAATGCTGCTACCATTTTACCAAGCACCAGTTTCAAATGCCCAGAAACTCCACCTAAAGCTTATCAACTGAACTATCCATCAGTTGCTATTGCAAACTTGAATAACAACGAGACTGTCATCAGGACTGTCACCAATGTGGGTGGCAAAAGCGATTACACTGTTTCAGTCGAAGAGCCACCAGGTGTATCAGTCGATATCAATCCTAAGAAGCTATCTTTCCAATCAGCAGGAGAAAAACAGACTTTCACTATAGAATTCACCCTTCAAAAGCCTCTTAATAAAAAATATGTCTTTGGGTCCTATACTTGGAGTGATGGAAATCATCTAGTCAGGAGTCCCATAGCTGTCTCATCAATGTAA___ATAGGCATACTCAGCCATTCATCTCATGGGTCACTAAAATGGATGAACTTGAGGAATAAGAATCTTTATGCTTTAAGAATGTGAGTGGCTTTGATCCATGTCTGCTCAGGCTCCATACAAATTGGCTTCCAATGAGCTGGAGTGCTTGTAACTTGTAGCTGTATGTTCAAGCATAGTGACATCCTCTGCTCAGGTTGGATTTCTGTGCATTTCTCAAGATTGACAGAGAAAAGCTCTTTCAACTGAAATCTCTGTGTACAAGCAAATGCATTCAATACGAAGCAAATTTCCTC

Fln Alignment:

sp_v1.1_unigene28334___VVSDDAAIILAYINSTTTPVAQIVPATTVLGTTPAPFMAAFSSTGPNLLNPDIVKPDISAPGLNILAAWSGAASPTKLLMDDRRVKYNIISGTSMSCPHVAGVAALLRVIHPKWSPAAIKSALMTTANVTNNEGN-PISDASGNPATPFNYGSGQMNPNRASDPGLLYDAIIEDYLLFLCGSGI--NAATILPSTSFKCPETPPKAYQLNYPSV-AIANLNN----NETVIRTVTNVGGK-SDYTVSVEEP-PGVSVDINPKKLSFQSAGEKQTFTIEFTLQK----PLNKKYVFGSYTWSDGNHLVRSPIAV
D5AAS9_______________VGAKEGELIRQYIATTKGPTATISGLGTVLGIKPAPVVASFSSRGPNPETPEILKPDVIAPGVNILAGWTGAVGPSSLAIDRRRTQFNILSGTSMACPHVSGVAALLKGAHPQWSPAAVRSALMTTAYTQDNRGHRMIDEASGNASTPFDFGAGHVHPERAMDPGLIYDMDTEDYVRFLCSLNYTSKAIQVITRKPTRCPARRISPGNINYPSFSAVFDLTQPKKLSTVFFRTVTNVGPPLSVYRVRVIHPRGGVTVTVKPRKLVFTEKNQKLSYTVTVTTKHIDLLPGNADTRFCFISWTDGKHVVQSPITI

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
420		16		83	0.994512
657	85			14	0.993533
689		71		28	1.0
864	33		11	55	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain