SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28313

Length: 2738 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene28313
TGGAGAAATTACTGAATCAATCCAACACATTTTTCCATAATAGTGTGCACGATCTTCATCTGATTTGAAACATCTAGCAAATAATTTGTGGCAGATCCCCCACATTGATAATGTTTTATTGATTAAATTCTCAAGATTATAAGATCCAATCTGTACCACTGTGTTGGATTGATTCAGTAATTTCTCCAATTTTTTGTGTCGATTTTAGGGTTTCCATGGACGCAAAGTTTTTAAACCGATATGCATTGTCACTTGATAACTCTCCTCCCAATCCACCATCTGTGCCCACTTCTCGGCTGTCCTCGATTTCAATAGTTGATAGAAGAGGGTATGGAAGAATGAAAGCAGCAAGGTCTAGCCCAATTCGCTGCCAGAAAACCCACAATGAAAAATCTGTAAGCAGTACGAAATTAGAATTAAGCAGTGAAAATGGTGCTAGTTCTATCATCAAATCGAGGTCCATTGCGACAACCAAGTTACAGGATCAAATGGTTTCTCCTGCAATCTCTACCAACGGAAGATCGCATGAACAAATTGAAGGATCGATCATACAAAATGCCGAAGATTTCAGGGAAATAGCATCCCTTGTTCGCTCGACGAAGTTGAAGGTCCTTGAAAGGGATACAACTAGGTTGCCTAGGATTGAGACTGCTCGTGAATTTCATGAAGGTTTCAGCAAGGGACTTGGAATTGTCGAATTTCTCAAGGGAAAAAAATTTCTCATCACTGGTGCCACGGGATTCCTTGCCAAAGTGCTGATCGAGAAAATACTCAGGACGCAGCCTGAAGTTGGAAAGATTTTTCTTGTCATCAAGGCCAACGATTATGAGTCTGCACTACAAAGGTTGAAGAAAGAAGTGATGTCTTCTGACTTATTCAAGCGAATACACGAGACCTATGGCGACCAATACGAGGAATTCATGATGAAAAAGCTGGTTCCCGTTGTTGGAGATGTTACCCAAGATAATCTTGGAATAGAAGCCCACATCGCTGATGTGCTAGTACAGGAAGTCGATATAGTTCTGAACTCGGCAGCAAATACAACATTCGACGAACGGTATGACGTCGCACTGGACATAAACACGAGGGGAATTTCCCGTCTCCTGGCGTTTGTAAACCGCTGCAAAAAGCTTCAGCTATTTCTACAAATATCGACTGCGTATGTTAATGGACAGAGACAAGGCCGAGTGGCAGAGAAGCCTTTCCAGATGGGGGACAGCATTACCAGGGAGAAGGCCCAACTAGCTTTACATGAATCTCCTCCAATTTTGGACATTGAAGGTGAATTTGAATTAGCCAAGAAAACCCTAGAGGCTCTTGAGAACGAGACTTCAAATCTTCACAAATCAAATGGTCAGAGGTCACTGGATGGCGAGAAGCATGTGACTCAAGCCATGAAGGCATTAGGCATGGAAAGGGCAAGGAAATATGGATGGCAAGATACCTACGTGTTCAGCAAGGCAATGGGAGAAATGCTAATTGGCAAATTTCGTGGAGATTTACCAGTGGTCATAGTTCGTCCAAGTGTGATTGAGAGCACTTACTCTGATCCATTCCCCGGATGGATGGAGGGCAACAGAATGATGGATCCTATCGTTCTATACTATGGTAAAGGTCAGCTAACGGGCTTCTTGGCTGATACCAATGGAGTTCTAGACGTGGTGCCAGCGGATATGGTTGTAAATGCAACGTTAGCAGCCATGGCGAAGCATGCTGGAAAGACTGGTCTGGAGGTGTATCATGTGGCTTCTTCCGTTGTAAATCCACTGACATTTGGAAAACTAGCAGGAGTACTGTTTGATCATTTTAAATCCAATCCATACATTGACCCCAAAGGCAAGCACATCGAAGTACAGAAAATGAAATTATTCAACAAAATGGACGATTTCTCTGATCATGTTCGGAATCGTGCATTTGATATGCCACTCAACATCGGACGGAGTTCTCCAAAGAAAATATCAGAGAAGCGTAAGAGCATATGGCTGAAAGCAATAGAACAAGCCAAATATCTGGCCAATATATACCAACCATACACATTTTATCAGGGAAGGTTTGATAACTCAAACACAGAGGACTTATTTCGAGAGCTATCTGAGGAAGAAAAGGGAAGCTTTGATTTTGACGTGAAGAGAATTGAATGGGTAAATTACATTTCAAAAACCCATATTCCAGGCCTTCGCCAACATGTGATGAAAGGACGCGGTACCAAAATGGTGTAGTAGCAGGAATCCTATACAAATTTTTATTATTGCCATAAACTACATGGCTCCAGATTGTTACCAAAAGGGAGAAGTAACCTTATTTCCAGCGCCAATCATCAGCCCTTATAATTATTTCGAAGCAGAACATGTTATATTATTACCATTCCATTTCATTCAGATTCAAATAATGTTTGTTAATTGTTATTTAGCAATTTGATACCTGTGGCAGGGGAATAATATTATTCCAAAAAAAATAGAAGTCCATTATGGCTATTTGTATTTGCTACATCATACAGTGAACAACTGAGATATGGCTATTTGTATTTGCTACACCGTACAGAGAACAACTGAGATATTGGAAACCCTTCTGTGCACTATGTGGGCATCTATTTCCTCAAGGAATTTATGATGTAGTCCTTTGGGGACATATTCCACCCATTTATGCAATAACCATGCAGAATATAATATAAAAATATTTTGTTTAAAAAATATGAAAGAATAAAGATGGGAGTGCCATTTTGGCACTTATTTATAAAG

Ace file of the UniGene sp_v1.1_unigene28313

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	male sterility 2 [Brassica rapa subsp. chinensis]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen exine formation	GO:0010584	Biological Process	0.0	71%
Blast2go	fatty-acyl-CoA reductase (alcohol-forming) activity	GO:0080019	Molecular Function	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRT2

Fln msg: your sequence is longer than subject: 668 - 510

Fln protein: MDAKFLNRYALSLDNSPPNPPSVPTSRLSSISIVDRRGYGRMKAARSSPIRCQKTHNEKSVSSTKLELSSENGASSIIKSRSIATTKLQDQMVSPAISTNGRSHEQIEGSIIQNAEDFREIASLVRSTKLKVLERDTTRLPRIETAREFHEGFSKGLGIVEFLKGKKFLITGATGFLAKVLIEKILRTQPEVGKIFLVIKANDYESALQRLKKEVMSSDLFKRIHETYGDQYEEFMMKKLVPVVGDVTQDNLGIEAHIADVLVQEVDIVLNSAANTTFDERYDVALDINTRGISRLLAFVNRCKKLQLFLQISTAYVNGQRQGRVAEKPFQMGDSITREKAQLALHESPPILDIEGEFELAKKTLEALENETSNLHKSNGQRSLDGEKHVTQAMKALGMERARKYGWQDTYVFSKAMGEMLIGKFRGDLPVVIVRPSVIESTYSDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADTNGVLDVVPADMVVNATLAAMAKHAGKTGLEVYHVASSVVNPLTFGKLAGVLFDHFKSNPYIDPKGKHIEVQKMKLFNKMDDFSDHVRNRAFDMPLNIGRSSPKKISEKRKSIWLKAIEQAKYLANIYQPYTFYQGRFDNSNTEDLFRELSEEEKGSFDFDVKRIEWVNYISKTHIPGLRQHVMKGRGTKMV*

Protein Length: 669

Fln nts: TGGAGAAATTACTGAATCAATCCAACACATTTTTCCATAATAGTGTGCACGATCTTCATCTGATTTGAAACATCTAGCAAATAATTTGTGGCAGATCCCCCACATTGATAATGTTTTATTGATTAAATTCTCAAGATTATAAGATCCAATCTGTACCACTGTGTTGGATTGATTCAGTAATTTCTCCAATTTTTTGTGTCGATTTTAGGGTTTCC_-_ATGGACGCAAAGTTTTTAAACCGATATGCATTGTCACTTGATAACTCTCCTCCCAATCCACCATCTGTGCCCACTTCTCGGCTGTCCTCGATTTCAATAGTTGATAGAAGAGGGTATGGAAGAATGAAAGCAGCAAGGTCTAGCCCAATTCGCTGCCAGAAAACCCACAATGAAAAATCTGTAAGCAGTACGAAATTAGAATTAAGCAGTGAAAATGGTGCTAGTTCTATCATCAAATCGAGGTCCATTGCGACAACCAAGTTACAGGATCAAATGGTTTCTCCTGCAATCTCTACCAACGGAAGATCGCATGAACAAATTGAAGGATCGATCATACAAAATGCCGAAGATTTCAGGGAAATAGCATCCCTTGTTCGCTCGACGAAGTTGAAGGTCCTTGAAAGGGATACAACTAGGTTGCCTAGGATTGAGACTGCTCGTGAATTTCATGAAGGTTTCAGCAAGGGACTTGGAATTGTCGAATTTCTCAAGGGAAAAAAATTTCTCATCACTGGTGCCACGGGATTCCTTGCCAAAGTGCTGATCGAGAAAATACTCAGGACGCAGCCTGAAGTTGGAAAGATTTTTCTTGTCATCAAGGCCAACGATTATGAGTCTGCACTACAAAGGTTGAAGAAAGAAGTGATGTCTTCTGACTTATTCAAGCGAATACACGAGACCTATGGCGACCAATACGAGGAATTCATGATGAAAAAGCTGGTTCCCGTTGTTGGAGATGTTACCCAAGATAATCTTGGAATAGAAGCCCACATCGCTGATGTGCTAGTACAGGAAGTCGATATAGTTCTGAACTCGGCAGCAAATACAACATTCGACGAACGGTATGACGTCGCACTGGACATAAACACGAGGGGAATTTCCCGTCTCCTGGCGTTTGTAAACCGCTGCAAAAAGCTTCAGCTATTTCTACAAATATCGACTGCGTATGTTAATGGACAGAGACAAGGCCGAGTGGCAGAGAAGCCTTTCCAGATGGGGGACAGCATTACCAGGGAGAAGGCCCAACTAGCTTTACATGAATCTCCTCCAATTTTGGACATTGAAGGTGAATTTGAATTAGCCAAGAAAACCCTAGAGGCTCTTGAGAACGAGACTTCAAATCTTCACAAATCAAATGGTCAGAGGTCACTGGATGGCGAGAAGCATGTGACTCAAGCCATGAAGGCATTAGGCATGGAAAGGGCAAGGAAATATGGATGGCAAGATACCTACGTGTTCAGCAAGGCAATGGGAGAAATGCTAATTGGCAAATTTCGTGGAGATTTACCAGTGGTCATAGTTCGTCCAAGTGTGATTGAGAGCACTTACTCTGATCCATTCCCCGGATGGATGGAGGGCAACAGAATGATGGATCCTATCGTTCTATACTATGGTAAAGGTCAGCTAACGGGCTTCTTGGCTGATACCAATGGAGTTCTAGACGTGGTGCCAGCGGATATGGTTGTAAATGCAACGTTAGCAGCCATGGCGAAGCATGCTGGAAAGACTGGTCTGGAGGTGTATCATGTGGCTTCTTCCGTTGTAAATCCACTGACATTTGGAAAACTAGCAGGAGTACTGTTTGATCATTTTAAATCCAATCCATACATTGACCCCAAAGGCAAGCACATCGAAGTACAGAAAATGAAATTATTCAACAAAATGGACGATTTCTCTGATCATGTTCGGAATCGTGCATTTGATATGCCACTCAACATCGGACGGAGTTCTCCAAAGAAAATATCAGAGAAGCGTAAGAGCATATGGCTGAAAGCAATAGAACAAGCCAAATATCTGGCCAATATATACCAACCATACACATTTTATCAGGGAAGGTTTGATAACTCAAACACAGAGGACTTATTTCGAGAGCTATCTGAGGAAGAAAAGGGAAGCTTTGATTTTGACGTGAAGAGAATTGAATGGGTAAATTACATTTCAAAAACCCATATTCCAGGCCTTCGCCAACATGTGATGAAAGGACGCGGTACCAAAATGGTGTAG___TAGCAGGAATCCTATACAAATTTTTATTATTGCCATAAACTACATGGCTCCAGATTGTTACCAAAAGGGAGAAGTAACCTTATTTCCAGCGCCAATCATCAGCCCTTATAATTATTTCGAAGCAGAACATGTTATATTATTACCATTCCATTTCATTCAGATTCAAATAATGTTTGTTAATTGTTATTTAGCAATTTGATACCTGTGGCAGGGGAATAATATTATTCCAAAAAAAATAGAAGTCCATTATGGCTATTTGTATTTGCTACATCATACAGTGAACAACTGAGATATGGCTATTTGTATTTGCTACACCGTACAGAGAACAACTGAGATATTGGAAACCCTTCTGTGCACTATGTGGGCATCTATTTCCTCAAGGAATTTATGATGTAGTCCTTTGGGGACATATTCCACCCATTTATGCAATAACCATGCAGAATATAATATAAAAATATTTTGTTTAAAAAATATGAAAGAATAAAGATGGGAGTGCCATTTTGGCACTTATTTATAAAG

Fln Alignment:

sp_v1.1_unigene28313___IVEFLKGKKFLITGATGFLAKVLIEKILRTQPEVGKIFLVIKANDYESALQRLKKEVMSSDLFKRIHETYGDQYEEFMMKKLVPVVGDVTQD-NLGIEAHIA-DVLVQEVDIVLNSAANTTFDERYDVALDINTRGISRLLAFVNRCKKLQLFLQISTAYVNGQRQGRVAEKPFQMGDSITREKAQLALHESPPI-LDIEGEFELAKKTLEALENETSNLHKSNGQRSLDGEKHVTQAMKALGMERARKYGWQDTYVFSKAMGEMLIGKFRGDLPVVIVRPSVIESTYSDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADTNGVLDVVPADMVVNATLAAMAKHAGKTGLEVYHVASSVVNPLTFGKLAGVLFDHFKSNPYIDPKGKHIEVQKMKLFNKMDDFSDHVRNRAFDMPLNIGRSSPKKIS------EKRKSIWLKAIEQAKYLANIYQPYTFYQGRFDNSNTEDLFRELSEEEKGSFDFDVKRIEWVNYISKTHIPGLRQHVMK
B8LRT2_______________ILGFLNEKNILVTGSTGFLGKIFVEKILRTQPGVKRIFVLLRSEDFESAKIRFKNEVMGAELFKTLRGQHGDNFENFVFQKVVPVVGDVAGGHNLGIDKESTREHLWNILDAIVNNAASTMFDDRYDISLNVNTRGAENIVEFAKRCRKLQILLHVSTAYVVGRGSGRIKESPLKIGESMTAGN-ELEDENGPPLSLDIEAEFGLLENTLAKLHMDSSATGTTSTRSVQD--KEAIKHLKELGLERARRFGWPNTYSFTKAMGEMVVENRRENLPVVILRPTIIESTLAEPFPGWMEGTRTMDTFIVGYGKGRISFFLGDPELFLD-IPADMVVNQMMVAMATHAYQNDLFIYHVASSVGNPLRYSLLSDVAYNYFSKNPCVSNDGKIIRVKEMRFLKSMSSFRLHMFQR-YKAPLLVLGVVNEVISIFTARFTARYNQMLRNYNFMMYLAELYEPYVLFQGSFDITNTERLLEKVSVQDLEAFNFDVKCIDWVEYLSNVHIPGVVKYVLK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2069	87		12		0.992554
2074	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain