SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28294

Length: 1454 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28294

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor, putative; K03264 translation initiation factor eIF-6	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	eukaryotic translation initiation factor 6	-	-	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Translation initiation factor IF6	IPR002769	-	0.0	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK83

Fln msg:

Fln protein: MATRTQFENSSEIGVFSKLTNGYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRIVGRLCAGNKNGLLLPNTTTDQELQHLRNSLPDEVVVQRVEERLSALGNCVVCNDHVALIHTDLDRVTEELIADVLGVEVFRQTIAGNILVGSYSVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVIESVFKLRESQPSAIVDEMRKSLIDTFV*

Protein Length: 247

Fln nts: ATGTATTCGTACAAAGCACATAAACGACAACTTTCCATGCCAAACCCTCTCAGTCAATTCAAACAATACCCGAGGGTAACCACACGGGGACTTCTACCAAACGATCGACTCGTCACTGGCTGTTGCTCGATTATATGATTAGTCCTCTCTTACCGATTAACATTTCAGTGTGATATACATCTATTGGCTTGGGTACGGAAGTCTACTTTACTCTGAAATTTCGATCCCCGGATCAAGTGCGATTACGTCTATTGGCTTGGGTGCCGAAGGCTACACTACTCTGAAATTTCGAACCCCGGATCAGGCCGAATTTGCCAGGACGAACATCACTTTAAGCTTGCAGCAATACGCACTGCTATCTACTTACGGCTGTAAGCTCAAAGCTATAATACTCTGTGGAGTAAATCATCTCTTTGGCTGTGCATC_-_ATGGCTACCAGAACTCAGTTTGAAAATTCCAGTGAGATTGGTGTTTTTTCAAAACTTACTAATGGATATTGCCTGGTGGCCATTGGAGGATCAGAGAACTTTTACAGCACATTTGAGGCAGAGCTGGCAGATGTTATTCCTGTTGTGAAGACATCTATAGGAGGCACCAGGATTGTTGGCCGTCTTTGTGCTGGGAACAAAAATGGTCTTTTGCTGCCAAATACAACTACCGACCAAGAGCTTCAACACTTGAGGAATAGTTTGCCTGATGAAGTTGTGGTGCAACGTGTTGAAGAACGACTATCTGCGCTTGGCAATTGTGTGGTGTGCAATGATCATGTTGCTCTCATTCATACCGACCTGGACAGGGTGACAGAAGAATTAATAGCAGACGTTCTGGGAGTTGAAGTTTTCAGGCAAACTATTGCGGGAAATATTCTTGTTGGGAGTTATAGCGTTTTCTCCAATAGGGGTGGTCTGGTCCATCCACACACTTCAATAGAAGATCTGGATGAATTATCAACTCTTCTTCAAGTGCCTCTTGTGGCAGGCACTGTCAATCGTGGAAGTGAAGTAATAGGCGCTGGAATGATTGTAAATGATTGGACAGCTTTTTGTGGTCTGGACACAACTGCAACTGAATTGTCTGTTATCGAAAGTGTTTTCAAGTTGAGAGAATCACAACCTAGTGCTATCGTTGATGAGATGAGAAAGTCATTGATAGATACTTTTGTCTGA___GTATCAATGGCATGTGTTATGTCTCATCGCTTGTTAGTTAAACTTACTATCAGGCGTGTCTAAAATTTCAATGGATAATCTTGTCATTTTGCGAAATTGCTGTGAAAGTTCATGCTTTACACAGTTGTGAGACAACATTGTTACAACTAGCAATTGCCCCAAAAGGTGCACAGACTTAACAATTGCCCCAAAAGGTGCAAAGACATGTAAATAGGATGGTTAAATTGCAAAAACTATAACTTTGATTTTGATTTCTGTAATTAAGCTGATATATTTTGTAGATAATTGTA

Fln Alignment:

sp_v1.1_unigene28294___MATRTQFENSSEIGVFSKLTNGYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRIVGRLCAGNKNGLLLPNTTTDQELQHLRNSLPDEVVVQRVEERLSALGNCVVCNDHVALIHTDLDRVTEELIADVLGVEVFRQTIAGNILVGSYSVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVIESVFKLRESQPSAIVDEMRKSLIDTFV
A9NK83_______________MATRTQFENSSEVGVFSKLTNAYCLVAIGGSENFYSTFEAELADVIPVVKTSIAGTRIIGRLCAGNKNGLLLPNTTTDEELQHLRNSLPDEVVVQRVEERLSALGNCVVCNDHVALIHTDLDRETEELIANVLGVEVFRQTIAGNILVGSYCMFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVIESVFKLRESQPSAIVDEMKKSLIDTFV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
298		77		22	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain