SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28290

Length: 1032 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28290

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	developmentally-regulated GTP-binding protein 2; K06944	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	protein	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Blast2go	GTP-binding domain, HSR1-related	IPR002917	-	92%
Blast2go	TGS	IPR004095	-	92%
Blast2go	Small GTP-binding protein domain	IPR005225	-	92%
Blast2go	GTP binding domain	IPR006073	-	92%
Blast2go	GTP1/OBG, conserved site	IPR006074	-	92%
Blast2go	TGS-like	IPR012676	-	92%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACC2

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 343 - 369

Fln protein: KAKIAKLRTQLLEPPKGSSGAGDGFEVTKYGHGRVALIGFPSVGKSTLLTLLTGTLSEAASYEFTTLTCIPGVIHYNDAKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFKRKKTGGISFNSTMALTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYIKCVYVYNKIDVVGIDDVDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYTKPQGQQPDFAEPFVLSTDRGGCTVEDLCNHIHKTLMKDVKYVLVWGTSAKHYPQRCGMAHILNDEDVVQIVKKKEKEEE

Protein Length: 344

Fln nts: TTAAAGCTAAGATAGCGAAGCTGAGGACACAGCTATTGGAGCCACCGAAGGGTTCTAGTGGTGCTGGTGATGGTTTTGAAGTCACAAAATATGGTCATGGTCGTGTTGCTCTGATAGGATTCCCGAGTGTGGGAAAATCAACACTTCTTACTTTACTCACTGGAACTCTCTCAGAAGCAGCATCATATGAGTTCACAACACTTACTTGTATTCCTGGTGTCATACACTACAATGATGCTAAGATACAACTTCTTGATCTTCCTGGAATCATTGAAGGTGCTTCTGAAGGCAAGGGTCGTGGTCGACAGGTGATTGCGGTCGCAAAGTCTTCAGATCTAGTGTTAATGGTTCTTGATGCATCTAAAAGTGAGGGTCATCGACAAATTTTAACAAGGGAATTGGAAGCAGTGGGCTTGCGCTTAAACAAGAGGCCTCCTCAGATATATTTCAAGAGGAAAAAGACTGGTGGCATTTCCTTCAACAGCACAATGGCATTAACACATGTTGACGAAAAACTTTGTTATCAAATATTACATGAGTACAAGATCCACAATGCTGAGGTATTGTTCAGGGAAGATGCCACTGTTGATGATCTCATCGACGTCATTGAAGGGAACCGGAAATATATCAAATGTGTTTATGTTTATAATAAAATTGATGTTGTCGGTATTGATGATGTTGACCGGCTATCCCGGCAGCCAAATTCTATTGTCATTAGTTGCAATTTGAAGCTCAATCTTGATCGGTTACTTGCAAGAATGTGGGATGAAATGGGGTTAGTAAGAGTCTACACCAAACCTCAGGGACAGCAACCTGATTTTGCTGAACCTTTTGTCCTGTCTACGGACAGAGGTGGTTGTACAGTGGAAGATTTATGTAACCATATACACAAAACATTGATGAAGGATGTTAAATATGTACTAGTCTGGGGAACAAGTGCAAAGCATTATCCACAACGTTGTGGCATGGCACACATACTTAATGATGAGGATGTGGTACAGATTGTAAAGAAGAAGGAAAAAGAAGAAGAAG

Fln Alignment:

sp_v1.1_unigene28290___KAKIAKLRTQLLEPPK--GSSGAGDGFEVTKYGHGRVALIGFPSVGKSXXXXXXXXXXSEAASYEFTTLTCIPGVIHYNDAKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFKRKKTGGISFNSTMALTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYIKCVYVYNKIDVVGIDDVDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYTKPQGQQPDFAEPFVLSTDRGGCTVEDLCNHIHKTLMKDVKYVLVWGTSAKHYPQRCGMAHILNDEDVVQIV
D5ACC2_______________KAKLAKLRREILAPPTKGGGGGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVIRYRGAKLQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRIIEKELEGFGIRLNKEPPNLSFRRKDKGGINFTSTVANTLLDLETVKAICGEYRIHNADISLRYDASADDLIDVIEGSRIYMPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNMDGLLEKIWEYLNLTRIYTKPKGLNPDYEDPVILSSK--SRTVEDFCTRIHKDMLKQFKYALVWGSSAKHKPQRVGKDHELEDEDVVQII

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
863	83		16		0.999991
1005	16		83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1021	1032	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain