SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28287

Length: 1436 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28287

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450, putative n=2 Tax=Arabidopsis RepID=Q9C788_ARATH	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	cytochrome p450	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alkane 1-monooxygenase.	EC:1.14.15.3	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	80%
Blast2go	Arachidonic acid metabolism	00590	80%
Blast2go	Retinol metabolism	00830	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	80%
Blast2go	binding	GO:0005488	Molecular Function	80%
Blast2go	alkane 1-monooxygenase activity	GO:0018685	Molecular Function	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	0.0	80%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	0.0	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT68

Fln msg: your sequence is shorter than subject: 343 - 543

Fln protein: NIGRIKSSCTLSLQLPENPFARAFDTANIVVTLRFIDPLWRIKRFLRIGTEALLNQSIQKVDNFTYSVIRKRKAEIEQAKANGNRAQIKADILSRFIELGDDPESKLTDKNLRDIVLNFVIAGRDTTAATLSWFTYMMITHPQVAQKLHDEVCDFEAQRAREEGVTLIQPHPEDFHAFNERIAQFSHLLNYDSLGRLTYLYAAITETLRLYPAVPQDPKGILEDDVLPDGTILKRGGMVTYVPYSMGRMESIWGSDACEFKPERWFKDGALQHISPFKFTAFQAGPRICLGKDSAYLQMKMTAAILCRFFEFHLVPEHPVKYRMMTILSMAHGLKVTISRRI*

Protein Length: 344

Fln nts: CAATATTGGCCGTATCAAAAGCTCTTGCACACTGTCTCTGCAGCTCCCTGAGAACCCATTTGCAAGAGCTTTTGATACGGCCAATATTGTGGTGACGCTGCGGTTCATCGACCCTCTGTGGCGGATCAAGCGTTTTCTTCGCATTGGAACCGAGGCTTTGTTAAATCAGAGCATACAGAAAGTCGATAACTTCACTTATTCTGTGATTCGCAAAAGAAAAGCCGAGATTGAACAAGCAAAGGCCAATGGGAACCGTGCTCAGATAAAAGCTGACATACTGTCGAGATTCATAGAGTTAGGCGACGATCCAGAAAGCAAATTGACGGACAAAAACCTGAGAGACATAGTTCTCAATTTTGTGATTGCGGGTCGCGATACAACTGCTGCTACACTCTCCTGGTTTACCTACATGATGATTACTCATCCACAAGTAGCTCAAAAGCTGCATGACGAAGTATGCGATTTTGAGGCACAGAGAGCGCGAGAAGAGGGCGTTACCCTAATCCAACCTCATCCTGAAGATTTCCACGCCTTTAATGAACGTATCGCTCAATTTTCTCATCTTCTCAACTATGATTCCTTGGGAAGGCTGACTTACTTGTATGCTGCAATCACAGAAACCCTGCGTTTATACCCCGCTGTTCCACAGGATCCCAAGGGCATTTTGGAGGATGATGTTCTTCCAGATGGGACGATTTTGAAAAGAGGAGGAATGGTAACATACGTTCCCTACTCTATGGGACGCATGGAATCCATTTGGGGTTCAGATGCATGTGAGTTCAAACCTGAAAGATGGTTCAAAGACGGAGCACTCCAGCATATTTCTCCCTTCAAGTTCACAGCCTTTCAGGCAGGTCCACGAATATGTTTGGGTAAAGACTCTGCTTACCTGCAGATGAAGATGACGGCAGCCATTCTATGCAGATTCTTCGAATTCCATTTGGTTCCGGAACATCCTGTCAAGTATAGAATGATGACCATTCTTTCTATGGCTCATGGCTTGAAGGTCACCATTTCCAGACGCATCTGA___TCTTCGAATTTCATTAATAATAGTAGGTAATCATGATTTTCAGAAAGTAACAGCACTACATGGCACGATTATCTTCCACAAATTATAAAGCATTGTCCATCTTATTTTGCATTTTGGCTTGCGTGGCTATTGCAATTCTAGGATAGTGATAGTTCTTAATACGAGTATATTACAGTGTTAAAACTAACAGAATATCCATATGGCATGGAACGATACTAGACATAATATAATACGAGTATATTACAGTGTTAAAATCCATGATCATCCATATCGCATGGAAATGAAAACATAATATAATATCCATATGGCATGGAATGGAACGATAGTAGACATAATATTTTAAAGTCGGATTAAAATGTTCTATATTTAGAAAGACGAAATTGTATTATTGGAAAAACTATTTTTT

Fln Alignment:

sp_v1.1_unigene28287___TLSLQLPENPFARAFDTANIVVTLRFIDPLWRIKRFLRIGTEALLNQSIQKVDNFTYSVIRKRKAEIEQAKANGNRAQIKADILSRFIELGDDPESKLTDKNLRDIVLNFVIAGRDTTAATLSWFTYMMITHPQVAQKLHDEVCDFEAQRAREEGVTLIQPHPEDFHAFNERIAQFSHLLNYDSLGRLTYLYAAITETLRLYPAVPQDPKGILEDDVLPDGTILKRGGMVTYVPYSMGRMESIWGSDACEFKPERWF-KDGALQHISPFKFTAFQAGPRICLGKDSAYLQMKMTAAILCRFFEFHLVPEHPVKYRMMTILSMA
C0PT68_______________SLASSLPDVPFASAFDRSNALCASRYFDPFWKLKKRFNLGSEAKLKQDVRVLDDFTYGIIQKRRNLL-----NAHQDEVKSDLLSRFFFMAKENPELYTDKKLRDAILNFVIAGRDTTAVTLSWLFWLLAKNPSAEDKIVQELEEVERSHV---GLSIT-----DHNDGSDRLEKYSQLLTYDTLSKMHYLQAAITESLRLYPAVPLNGKTAVSDDILPDGNKVKRGNVINYVPYAMGRMQRLWGDDALDFKPERWLNKDGVFQPQSPFKFVAFQAGPRICLGKDSAYLQMKIAAATLLRFFKFELVAGYRIEYMVALTLLMS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
817	10		90		0.999898
826		10		90	0.999898
1033		5		95	0.997749
1254	82		17		1.0
1285	10			90	0.90298
1313		42	57		1.0
1318		57		42	1.0
1341	66			33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain