SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28273

Length: 2258 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene28273
CAGCGTGGCTTTGGACATTTATGGGTAGGATTCTAGTGGAAAGCTTTTTAGAAGTACGGGGGTTAAGTCATTTTGAGGGAAATTTGTGGGCTTCCTGTATAGGTTTCAGAGCATCTGTTGCATGTGGGGCACAGGCTGTGCGCCATTGTTGTGTTTCAAGCTAGGGTCATCGCTGTGATTATAATGATATAAGAAGGGCTGGGGTCTTGAACAAATGCAAGTGCGGATTAGTAGTGTATTGGGTTGTGCAAAGGAAGTGGTGAAGGGTCCATCTAGTTATATATTGGATTGGAGGTGGTGAAGGGCATATATATATAGTTGTGTGTTTTGTTGTAGGCAGTAGGACTGTGGATTACTAGGATTATAGCTCAACTGATTGAAAGACTGTGTTTTACAAAGGTGGACTAATGGGGGAAAAACTTGGGAGTAGAGGTCTGCTCATCCTGCTGGCTTTTGTGTTATGCATCTCTTTTACAGCTGAAGCAATAGGTGTGAACTATGGAAGAATGGGAGACGATCTTCCTCCTCCCAGTGAAGTGGCGAAATTCCTACAGACCACAATGATTGACAAAGTGAAGCTCTTCGATGCAGATCCTGGTGTCTTGCAAGCTTTTGCCAATACAAATATAGGGGTTGTTGTCGCCGTGGCAAATGACCAAATCGCAGCCCTTAACAAACTGCCTGCAGCACAGGATTGGGTGAAGGAAAACGTGGCTCCTTTCGTACCAGCTACAAATATACTTGCCATATCTGTGGGAAATGAGATTCTTTCCACGGGAAACAAAGTGCTAATATCCCAACTCGTCCCTGCCATGCAAAATCTTCATACTGCTCTTGTTGGTGCCTCTCTTGACAAGCAAATCAAGGTCTCTACACCTCATTCGCTTGGTATTCTGTCTGCTTCTGAGCCCCCATCCATAGGAAGGTTCCGTCGAGGCTATGATAGAGTTATTCTAAAGCCATTGTTGAACTTTCTCAGAACAACAGGGGCTCCTTTCATGATCAACCCTTATCCATATTTTGGCTACACAGATAAGACCTTGAACTATGCTCTGTTTAAGCCAAATCAAGGTGTTTTTGACAATAATACTGGAATCACCTATACCAACATGTTCCAAGCTCAGTTGGATGCTGTCTACTCGGCTATGAAACTTTTGGGGTTCTCAGATGTAGATATCGTTGTGGCTGAAACCGGGTGGCCATCAGTTGGAGATCCTGACCAGACAGCTGTCAATGTGGAGAACGCTCTTTCCTACAATGGCAACCTCATCAAACTTGTCAATTCCAATGCAGGAACTCCGTTGATGCCCAACAAAACCTTTGATACTTACATATTTTCTCTCTTCAATGAAGATCTCAAGCCCGGTCCTACTGCAGAGCGCAACTTTGGGCTATTCAAACCAGACATGACCATGGTTTATGATGTTGGGCTCCTGAAGTCTGAGAGTGCAACTCCTGCGCCTATTTCTACGGCACCAGTAACACCGGCCACCCCAGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCTGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCGGCACCAGTTACAGGAACAGATAAGTCTTGGTGTGTTGCTAAACCAGATGCAGATCCCAATGTACTCCAAGACAATATAGATTATGCATGTGGGCAGGGAGTGGACTGCAGTGCTATTCAAGCAGGTGGCCAGTGCTTTACTCCAAATACTGTTGTGGCACATGCTACGTATGCAATGAATTCTTATTACCAGCTAACTGGTCGCCACAGCTATGATTGTGATTTTGCTCAAACAGGGGTTCTTACACAGGAGGATCCAAGTTATGGTACGTGTGTATACCCGACAATATAGCGTACAATTCACCTTCAGAAATTTTTTCAAAGCTCATTGAAGAAGCGTATTAGCATCATCGGCTAATATTTAGGATAGCATTTATTTAATTTAACTGTGTTATATAGTACTTGTAATCAGTAACAGCTATAAAGCTGCAGAATTCAGGTTATAGTGGACCATCAGTAGGGATTCTGTCAGTGGTGCTAATTTATTTGTATACGATTTGCCTTTACGTTTTGTAGCGATGTGGGTGTTATCGATGAATATTAAATATATTCATGTAACGCTTGCGAATTATAATTTTACCTGTTTTATAATATTTTCCAACGCTGGCGTTCTTTGAATGGTATCTATCTGAAGGATGTGTTCTGCAACACCTTACTGCGAATTATAATTTTACCTGTTTTATAA

Ace file of the UniGene sp_v1.1_unigene28273 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	glucan endo- -beta-glucosidase	-	-	70%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 17	IPR000490	-	70%
Blast2go	X8	IPR012946	-	70%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	70%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVN4

Fln msg:

Fln protein: MGEKLGSRGLLILLAFVLCISFTAEAIGVNYGRMGDDLPPPSEVAKFLQTTMIDKVKLFDADPGVLQAFANTNIGVVVAVANDQIAALNKLPAAQDWVKENVAPFVPATNILAISVGNEILSTGNKVLISQLVPAMQNLHTALVGASLDKQIKVSTPHSLGILSASEPPSIGRFRRGYDRVILKPLLNFLRTTGAPFMINPYPYFGYTDKTLNYALFKPNQGVFDNNTGITYTNMFQAQLDAVYSAMKLLGFSDVDIVVAETGWPSVGDPDQTAVNVENALSYNGNLIKLVNSNAGTPLMPNKTFDTYIFSLFNEDLKPGPTAERNFGLFKPDMTMVYDVGLLKSESATPAPISTAPVTPATPAPISTAPVTPTTPAPISTAPVTPTTPAPVTGTDKSWCVAKPDADPNVLQDNIDYACGQGVDCSAIQAGGQCFTPNTVVAHATYAMNSYYQLTGRHSYDCDFAQTGVLTQEDPSYGTCVYPTI*

Protein Length: 487

Fln nts: CAGCGTGGCTTTGGACATTTATGGGTAGGATTCTAGTGGAAAGCTTTTTAGAAGTACGGGGGTTAAGTCATTTTGAGGGAAATTTGTGGGCTTCCTGTATAGGTTTCAGAGCATCTGTTGCATGTGGGGCACAGGCTGTGCGCCATTGTTGTGTTTCAAGCTAGGGTCATCGCTGTGATTATAATGATATAAGAAGGGCTGGGGTCTTGAACAAATGCAAGTGCGGATTAGTAGTGTATTGGGTTGTGCAAAGGAAGTGGTGAAGGGTCCATCTAGTTATATATTGGATTGGAGGTGGTGAAGGGCATATATATATAGTTGTGTGTTTTGTTGTAGGCAGTAGGACTGTGGATTACTAGGATTATAGCTCAACTGATTGAAAGACTGTGTTTTACAAAGGTGGACTA_-_ATGGGGGAAAAACTTGGGAGTAGAGGTCTGCTCATCCTGCTGGCTTTTGTGTTATGCATCTCTTTTACAGCTGAAGCAATAGGTGTGAACTATGGAAGAATGGGAGACGATCTTCCTCCTCCCAGTGAAGTGGCGAAATTCCTACAGACCACAATGATTGACAAAGTGAAGCTCTTCGATGCAGATCCTGGTGTCTTGCAAGCTTTTGCCAATACAAATATAGGGGTTGTTGTCGCCGTGGCAAATGACCAAATCGCAGCCCTTAACAAACTGCCTGCAGCACAGGATTGGGTGAAGGAAAACGTGGCTCCTTTCGTACCAGCTACAAATATACTTGCCATATCTGTGGGAAATGAGATTCTTTCCACGGGAAACAAAGTGCTAATATCCCAACTCGTCCCTGCCATGCAAAATCTTCATACTGCTCTTGTTGGTGCCTCTCTTGACAAGCAAATCAAGGTCTCTACACCTCATTCGCTTGGTATTCTGTCTGCTTCTGAGCCCCCATCCATAGGAAGGTTCCGTCGAGGCTATGATAGAGTTATTCTAAAGCCATTGTTGAACTTTCTCAGAACAACAGGGGCTCCTTTCATGATCAACCCTTATCCATATTTTGGCTACACAGATAAGACCTTGAACTATGCTCTGTTTAAGCCAAATCAAGGTGTTTTTGACAATAATACTGGAATCACCTATACCAACATGTTCCAAGCTCAGTTGGATGCTGTCTACTCGGCTATGAAACTTTTGGGGTTCTCAGATGTAGATATCGTTGTGGCTGAAACCGGGTGGCCATCAGTTGGAGATCCTGACCAGACAGCTGTCAATGTGGAGAACGCTCTTTCCTACAATGGCAACCTCATCAAACTTGTCAATTCCAATGCAGGAACTCCGTTGATGCCCAACAAAACCTTTGATACTTACATATTTTCTCTCTTCAATGAAGATCTCAAGCCCGGTCCTACTGCAGAGCGCAACTTTGGGCTATTCAAACCAGACATGACCATGGTTTATGATGTTGGGCTCCTGAAGTCTGAGAGTGCAACTCCTGCGCCTATTTCTACGGCACCAGTAACACCGGCCACCCCAGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCTGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCGGCACCAGTTACAGGAACAGATAAGTCTTGGTGTGTTGCTAAACCAGATGCAGATCCCAATGTACTCCAAGACAATATAGATTATGCATGTGGGCAGGGAGTGGACTGCAGTGCTATTCAAGCAGGTGGCCAGTGCTTTACTCCAAATACTGTTGTGGCACATGCTACGTATGCAATGAATTCTTATTACCAGCTAACTGGTCGCCACAGCTATGATTGTGATTTTGCTCAAACAGGGGTTCTTACACAGGAGGATCCAAGTTATGGTACGTGTGTATACCCGACAATATAG___CGTACAATTCACCTTCAGAAATTTTTTCAAAGCTCATTGAAGAAGCGTATTAGCATCATCGGCTAATATTTAGGATAGCATTTATTTAATTTAACTGTGTTATATAGTACTTGTAATCAGTAACAGCTATAAAGCTGCAGAATTCAGGTTATAGTGGACCATCAGTAGGGATTCTGTCAGTGGTGCTAATTTATTTGTATACGATTTGCCTTTACGTTTTGTAGCGATGTGGGTGTTATCGATGAATATTAAATATATTCATGTAACGCTTGCGAATTATAATTTTACCTGTTTTATAATATTTTCCAACGCTGGCGTTCTTTGAATGGTATCTATCTGAAGGATGTGTTCTGCAACACCTTACTGCGAATTATAATTTTACCTGTTTTATAA

Fln Alignment:

sp_v1.1_unigene28273___MGEKLGSRGLLILLAFVLCISFTAEAIGVNYGRMGDDLPPPSEVAKFLQTTMIDKVKLFDADPGVLQAFANTNIGVVVAVANDQIAALNKLPAAQDWVKENVAPFVPATNILAISVGNEILSTGNKVLISQLVPAMQNLHTALVGASLDKQIKVSTPHSLGILSASEPPSIGRFRRGYDRVILKPLLNFLRTTGAPFMINPYPYFGYTDKTLNYALFKPNQGVFDNNTGITYTNMFQAQLDAVYSAMKLLGFSDVDIVVAETGWPSVGDPDQTAVNVENALSYNGNLIKLVNSNAGTPLMPNKTFDTYIFSLFNEDLKPGPTAERNFGLFKPDMTMVYDVGLLKSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTDKSWCVAKPDADPNVLQDNIDYACGQGVDCSAIQAGGQCFTPNTVVAHATYAMNSYYQLTGRHSYDCDFAQTGVLTQEDPSYGTCVY
A9NVN4_______________MGEKLGSRGLFMQLVLVLCIFFTAEAIGVNYGRMGDNLPPPSEVAKFLQTTNIDKVKLFDADPSVLQAFADTNITVVVAVANDEIPALNKLPAAQDWVKKNVAPYVPATNIIAISVGNEILSTGNKVLISQLIPAMQNLHTALVGASLDKQIKVSTPHSLGILAASEPPSIGRFRRGYDRVILKPLLNFLRTTGAPFMINPYPYFGYTDKTLDYALFKPNAGVFDKNTGITYANMFQAQLDAVYSAMKLLGFSDVDIVVAETGWPSVGDPDQTAVNMANALSYNGNLINLVNSNAGTPLMPNKTFDTYIFSLFNEDLKPGPIAERNFGLFKPDMTMVYDVGLLKSESATPAPISTAPVTPTTPAPISTAPVTPTTPAPISTVPVTPTTPAPVTGTDKSWCVAKPDADPKVLQANIDYACGQGVDCSPIQSGGSCFTPNTVVAHATYAMNSYYQLTGRHSYDCDFAQTGFLTQEDPSYGVCVY

SNPs (tot: 87)

Position	A %	C %	G %	T %	Probability
648	88		11		0.923564
738		11		88	0.923564
765	11			88	0.923564
806	5		94		0.9982
1115		7		92	0.999602
1189	8	66		25	1.0
1190	8	75	16		0.99999
1191			8	75	0.99999
1192	25			75	1.0
1194	75			25	1.0
1195		8	25	66	1.0
1196	33			66	1.0
1197		25		66	1.0
1198	25		75		1.0
1201	8	25		66	1.0
1202	33			66	1.0
1204	66		33		1.0
1205	66		25	8	1.0
1241	87	12			0.992554
1242	87		12		0.992554
1272		85		14	0.993533
1273		85	14		0.993533
1274	14	85			0.993533
1276	14			85	0.993533
1278	14	14		71	0.984337
1279		14		71	0.984337
1280	14		85		0.993533
1281	14			85	0.993533
1282			28	71	1.0
1283		85	14		0.993533
1284	14			85	0.993533
1285		14	85		0.993533
1286	85	14			0.993533
1287		28	71		1.0
1288	85		14		0.993533
1290	71	14	14		0.984337
1779		80	20		0.995493
2002		95	5		0.997749
2007			2	90	0.999998
2011	5			94	0.997984
2038	8		91		1.0
2040	91	8			1.0
2042		8		91	1.0
2044	3	12	75	9	1.0
2045		78	6	15	1.0
2047		3	18	78	1.0
2050	18			81	1.0
2051		19	80		1.0
2052	19			80	1.0
2053			19	80	1.0
2058	80		16	3	1.0
2059		83		16	1.0
2061	16	80	3		1.0
2063	90		9		1.0
2064	9		90		1.0
2066		85	14		1.0
2071		8		92	0.999718
2165	90			9	0.999842
2166		90	9		0.999842
2175	9	90			0.999842
2177		90	9		0.999842
2178	85		14		1.0
2179	90			10	0.999898
2181		11		88	0.999937
2182			11	88	0.999937
2183	11			88	0.999937
2185		87	12		0.999964
2204		30		69	1.0
2214	40		50	10	1.0
2215	90		10		0.90298
2217	90		10		0.90298
2218	90			10	0.90298
2220	22	77			0.999999
2221		11	11	77	0.968132
2222	11			88	0.923564
2223			22	77	0.999999
2224	11	88			0.923564
2228		12		75	0.975346
2230	12		87		0.992554
2231	75		25		1.0
2232	75		12		0.975346
2235	12	87			0.992554
2236		12	12	75	0.975346
2237	33	66			1.0
2238		75		25	0.996473
2239		33	33	33	0.997753
2241	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain