SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28254

Length: 1112 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28254 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RIC4; RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4); protein binding	-	-	2.0e-15	35%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	38%
Blast2go	protein	-	-	1.04543e-19	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular component assembly	GO:0022607	Biological Process	1.04543e-19	54%
Blast2go	regulation of cellular component size	GO:0032535	Biological Process	1.04543e-19	54%
Blast2go	regulation of cellular process	GO:0050794	Biological Process	1.04543e-19	54%
Blast2go	establishment of localization in cell	GO:0051649	Biological Process	1.04543e-19	54%
Blast2go	cell part	GO:0044464	Cellular Component	1.04543e-19	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PAK-box/P21-Rho-binding	IPR000095	-	1.04543e-19	54%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
437		85		14	0.993533
472		28	71		1.0
487		14		85	0.993533
491	85		14		0.993533
513	90		10		0.90298
576		16	83		0.994512
577		16	83		0.994512
578		16		83	0.994512
916		57		42	1.0
946		28		71	1.0
947		28		71	1.0
948		28	71		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain