SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28224

Length: 1144 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28224

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Solute carrier family 2, facilitated glucose transporter member 8 n=1 Tax=Zea mays RepID=B6TZY0_MAIZE	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	integral membrane protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	63%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	63%

Source	InterPros	Term	Type	Identity
Blast2go	General substrate transporter	IPR005828	-	63%
Blast2go	Sugar transporter, conserved site	IPR005829	-	63%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	63%
Blast2go	Major facilitator superfamily domain	IPR020846	-	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP5

Fln msg: your sequence is shorter than subject: 276 - 489

Fln protein: VYWFWDVFVIPEAPRWLAKIGKDSDFVSFLTNSSWF*F*CFPRGI*NKDCNGGKQSR**VQIVRVMPKKICIPFYYWYRVACLAAVDRS*WCYVLLTVPFL*AAGITSANAASLGLAVVQVVMTAFIAWLIDKAGRRILLMISSAGMAISLIVIAFAFYMKIHDSAVSNMASILALIGLLAYIIAFSLGMGAIPWIIMSEILPTNVKGIAGSVATLANWALSWAVTMTINLLLEWSTVGTFSLYALFTAITFIFVVLCVPETKGKTLEEIEASYR*

Protein Length: 277

Fln nts: AGTTTATTGGTTCTGGGACGTCTTTGTAATCCCAGAAGCTCCAAGATGGTTGGCTAAGATTGGTAAGGATTCAGATTTTGTAAGCTTCCTTACAAACTCTTCGTGGTTTTGATTCTGATGTTTCCCTCGAGGCATTTGAAATAAGGACTGCAATGGAGGCAAACAATCAAGATGATAGGTTCAAATTGTCCGAGTTATGCCAAAGAAGATATGCATTCCCTTTTACTATTGGTATAGGGTTGCTTGTCTTGCAGCAGTTGACAGGAGTTAGTGGTGTTATGTTTTACTAACAGTTCCATTTTTGTAAGCTGCTGGAATCACATCTGCTAATGCTGCATCCCTTGGACTGGCTGTTGTTCAGGTTGTCATGACTGCATTTATTGCATGGTTGATAGACAAAGCCGGTAGACGAATTCTTCTCATGATCTCATCTGCTGGAATGGCCATCAGTCTCATCGTCATTGCTTTTGCATTCTATATGAAGATTCACGATTCGGCAGTTTCCAATATGGCCAGTATTTTGGCTTTAATTGGTCTATTGGCTTACATTATCGCCTTCTCCCTTGGTATGGGAGCTATCCCATGGATTATTATGTCTGAGATACTTCCTACTAATGTCAAGGGAATCGCTGGTAGTGTGGCAACTTTGGCGAACTGGGCCCTTTCCTGGGCAGTAACAATGACTATTAATTTGCTTTTAGAGTGGAGCACTGTAGGAACATTCTCACTGTATGCTCTCTTTACTGCCATTACGTTCATCTTTGTGGTGCTGTGTGTGCCTGAAACCAAGGGGAAAACTCTGGAGGAAATTGAGGCATCATATAGATAA___GGTTGAGCTAGCCGGGAACCTTAGATTCTATTGATGGCAGGACATATTGCTCTGAAAGGATAAAGTCCTTTTAACAGAAAAAATTGGTGTATTTAGTGAAGATGCTTCATGAAGTGGTGAGATGACACTGGATCCATTACAGATCGAGTCGTATCCTCAAAAAATTGTATCTGAAAGAGCACGGGAAATCAAATCAGGTCACCTGTTTCAGGGATCTCATTATGTATTTCATTGATAAGACCCCGAATTTATCATGCATCTTCACTGATTAAGTAATACCCGTCGCATCATATTGGATATAGCGATTCTTCTGCT

Fln Alignment:

sp_v1.1_unigene28224___VFVIPEAPRWLAKIGKDSDFVSFLTNSSWF*F*CFPRGI*NKDCNGGKQSR**VQIVRVMPKKICIPFYYWYRVACLAAVDRS*WCYVLLTVPFL*AAGITSANAASLGLAVVQVVMTAFIAWLIDKAGRRILLMISSAGMAISLIVIAFAFYMKIHDSAVSNMXXXXXXXXXXXXXXXFSLGMGAIPWIIMSEILPTNVKGIAGSVATLANWALSWAVTMTINLLLEWSTVGTFSLYALFTAITFIFVVLCVPETKGKTLEEIEASYR
A9NUP5_______________LFVIPEAPRWLAKIGKDSDFEASLQTLRGFDSDVSLEAFEIRSAMEANNQEDRIRLSELCQRRYAFPFTIGIGLLVLQQLTGVSGVMFYNSSIFE-AAGITSANAASLGLAVVQVVMTGFIAWLMDKAGRRLLLMISSAGMAISLVLIAFAFYMKIHISAASHIASILALIGLLAYIIAFSLGMGAIPWIIMSEILPTNVKGIAGSVATLANWALSWAVTMTINLLLEWSSVGTFSLYALFTVFTFIFVVLCVPETKGKTLEEIEASYR

SNPs (tot: 6)

Position	A %	C %	T %	Probability
714	90		10	0.90298
757		90	10	0.90298
896	80	20		0.995493
926		25	75	0.996473
980	66		33	0.997452
1024	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain