SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28207

Length: 811 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28207 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0464 ATPases of the AAA+ class	-	-	3.0e-21	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	67%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, AAA-type, core	IPR003959	-	0.0	67%
Blast2go	MIT	IPR007330	-	0.0	67%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
585		16		83	0.994512
613		16		83	0.994512
652	40	60			1.0
760		80	20		0.995493
761	20	80			0.995493
762		80	20		0.995493
767	80	20			0.995493
768	20			80	0.995493
769			20	80	0.995493
770		20		80	0.995493
771	20	40		40	1.0
772	20			80	0.995493
775			80	20	0.995493
779	60		20		0.99255
780	80	20			0.995493
782			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain